Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq302 181 2e-40 seq2371 118 2e-21 >seq302 Length=2538925 Score = 181 bits (200), Expect = 2e-40 Identities = 220/300 (73%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| |||| || ||||| |||||||| ||| || ||||| ||| | | || | Sbjct 2286275 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGAGAGGCCG 2286334 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || |||||||| || || || | || || ||||||||||| ||||||||| | |||| Sbjct 2286335 TGTTGACGATGTCGAAGCCCACCTTGCCCCCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 2286394 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| |||| |||| ||||| |||| ||| || || ||||||| ||| | ||| Sbjct 2286395 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAATGGTGCCCCCATCTCCACCATGG 2286454 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 |||| || |||||||| ||||| || || || || || | | ||| | ||| || || | Sbjct 2286455 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 2286514 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || |||| ||| ||||| || | |||| ||| || || ||||| || || ||| ||| Sbjct 2286515 TGGCATCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCATCTCTTTTTCTCCTGCAA 2286574 Score = 140 bits (154), Expect = 5e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || | ||| || || | ||||||||| |||| || ||||| | ||| ||||| Sbjct 2288218 ATGAGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTGGTGCTTGAGC 2288277 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 || |||||||| | |||||| || | |||||| || |||||||||||||| | || ||| Sbjct 2288278 ACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCTGGC 2288337 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | || ||||| || | |||||| | |||||||| | |||||||| | || | Sbjct 2288338 ACCAGCCCGAACACCTCCTGCCCCACGGAGAAGCGCAGGTGCTCGGGCACGTGCGGTGGG 2288397 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 |||||||| | |||| || || || || || || |||||||| || || || | | Sbjct 2288398 TACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCTCCATCGATCATC 2288457 Query 9967 TG 9968 || Sbjct 2288458 TG 2288459 Score = 120 bits (132), Expect = 4e-22 Identities = 171/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 9453 GAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGAA 9512 ||| |||| || | |||| || |||||||| | | |||||| |||||||| | ||| Sbjct 2287044 GAAAGATTTGACCATGTGGGATAGTCCGTGCTCCAGCATGATGGAGTTGTTGTAGAGGAA 2287103 Query 9513 GTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCCA 9572 || | | | |||| | |||| || | || ||| |||| ||| | ||||| Sbjct 2287104 CTGCTGGAAGGTGTACTCCTGGTCGTGGATCTGGAAGGTATCGGGCAGCAGCGGGTGCCA 2287163 Query 9573 GCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGGTACCG 9630 | |||| ||||| ||||||||||| || || |||||||||||||| || ||| | Sbjct 2287164 GTGGTACAGGGTGTTGAACTCGGCTGCGATGCGGTTCTGGTACTGGAACTTCTGGT--TG 2287221 Query 9631 AACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATA 9689 ||||| | ||| |||||||| | |||| |||||||||||| || || ||||| || || Sbjct 2287222 AACAGCAGCTCGGGGTCAAACTTCAGCTTGAAGTGGTACCCACTCAGGTGCTGCACGTA 2287280 >seq2371 Length=4823497 Score = 118 bits (130), Expect = 2e-21 Identities = 184/263 (70%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 8932 GGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTA 8991 || ||| || ||||| || || || || | || || || || |||||||||||||| Sbjct 3203885 GGATGCCGTCTTCACAATCTCAAAGCCAGTAGCTCCACCAAATGTACTGGGTTTCCAGTA 3203826 Query 8992 CGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTC 9051 | | |||||||||||| || | | ||||| |||| |||||| ||||| || | ||| Sbjct 3203825 CTCTGGGGAGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTC 3203766 Query 9052 GATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTA 9111 | ||||| || || || ||| | ||| | ||||| |||| | ||||| | ||| Sbjct 3203765 CACCATGCTTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCGAGCAGCAAGCCTGGGTA 3203706 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 | || | ||| || | ||| ||||| || |||||| ||| || ||| |||||| ||| Sbjct 3203705 AAACTCCAGAGCATCAATGTCTCCATACAGCTCTTCCAGCTCTGCTGCTTTCTCCTCCTC 3203646 Query 9172 ACCTACAAGCGCCATATGCACAT 9194 ||| || ||| ||| |||| Sbjct 3203645 TCCT----GCACCAAATGAACAT 3203627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723700733547600