Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq302 181 2e-40
seq2371 118 2e-21
>seq302
Length=2538925
Score = 181 bits (200), Expect = 2e-40
Identities = 220/300 (73%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
|||| |||| || ||||| |||||||| ||| || ||||| ||| | | || |
Sbjct 2286275 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGAGAGGCCG 2286334
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || |||||||| || || || | || || ||||||||||| ||||||||| | ||||
Sbjct 2286335 TGTTGACGATGTCGAAGCCCACCTTGCCCCCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 2286394
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
|||||||| |||| |||| ||||| |||| ||| || || ||||||| ||| | |||
Sbjct 2286395 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAATGGTGCCCCCATCTCCACCATGG 2286454
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
|||| || |||||||| ||||| || || || || || | | ||| | ||| || || |
Sbjct 2286455 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 2286514
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179
|| |||| ||| ||||| || | |||| ||| || || ||||| || || ||| |||
Sbjct 2286515 TGGCATCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCATCTCTTTTTCTCCTGCAA 2286574
Score = 140 bits (154), Expect = 5e-28
Identities = 176/242 (73%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786
|| || || | ||| || || | ||||||||| |||| || ||||| | ||| |||||
Sbjct 2288218 ATGAGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTGGTGCTTGAGC 2288277
Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846
|| |||||||| | |||||| || | |||||| || |||||||||||||| | || |||
Sbjct 2288278 ACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCTGGC 2288337
Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906
|| | || ||||| || | |||||| | |||||||| | |||||||| | || |
Sbjct 2288338 ACCAGCCCGAACACCTCCTGCCCCACGGAGAAGCGCAGGTGCTCGGGCACGTGCGGTGGG 2288397
Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966
|||||||| | |||| || || || || || || |||||||| || || || | |
Sbjct 2288398 TACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCTCCATCGATCATC 2288457
Query 9967 TG 9968
||
Sbjct 2288458 TG 2288459
Score = 120 bits (132), Expect = 4e-22
Identities = 171/239 (72%), Gaps = 4/239 (2%)
Strand=Plus/Plus
Query 9453 GAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGAA 9512
||| |||| || | |||| || |||||||| | | |||||| |||||||| | |||
Sbjct 2287044 GAAAGATTTGACCATGTGGGATAGTCCGTGCTCCAGCATGATGGAGTTGTTGTAGAGGAA 2287103
Query 9513 GTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCCA 9572
|| | | | |||| | |||| || | || ||| |||| ||| | |||||
Sbjct 2287104 CTGCTGGAAGGTGTACTCCTGGTCGTGGATCTGGAAGGTATCGGGCAGCAGCGGGTGCCA 2287163
Query 9573 GCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGGTACCG 9630
| |||| ||||| ||||||||||| || || |||||||||||||| || ||| |
Sbjct 2287164 GTGGTACAGGGTGTTGAACTCGGCTGCGATGCGGTTCTGGTACTGGAACTTCTGGT--TG 2287221
Query 9631 AACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATA 9689
||||| | ||| |||||||| | |||| |||||||||||| || || ||||| || ||
Sbjct 2287222 AACAGCAGCTCGGGGTCAAACTTCAGCTTGAAGTGGTACCCACTCAGGTGCTGCACGTA 2287280
>seq2371
Length=4823497
Score = 118 bits (130), Expect = 2e-21
Identities = 184/263 (70%), Gaps = 4/263 (2%)
Strand=Plus/Minus
Query 8932 GGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTA 8991
|| ||| || ||||| || || || || | || || || || ||||||||||||||
Sbjct 3203885 GGATGCCGTCTTCACAATCTCAAAGCCAGTAGCTCCACCAAATGTACTGGGTTTCCAGTA 3203826
Query 8992 CGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTC 9051
| | |||||||||||| || | | ||||| |||| |||||| ||||| || | |||
Sbjct 3203825 CTCTGGGGAGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTC 3203766
Query 9052 GATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTA 9111
| ||||| || || || ||| | ||| | ||||| |||| | ||||| | |||
Sbjct 3203765 CACCATGCTTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCGAGCAGCAAGCCTGGGTA 3203706
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
| || | ||| || | ||| ||||| || |||||| ||| || ||| |||||| |||
Sbjct 3203705 AAACTCCAGAGCATCAATGTCTCCATACAGCTCTTCCAGCTCTGCTGCTTTCTCCTCCTC 3203646
Query 9172 ACCTACAAGCGCCATATGCACAT 9194
||| || ||| ||| ||||
Sbjct 3203645 TCCT----GCACCAAATGAACAT 3203627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723700733547600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |