Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq281 150 2e-31
seq334 91.5 1e-13
seq890 84.2 2e-11
>seq281
Length=2586918
Score = 150 bits (166), Expect = 2e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||||||| | || || ||| |||
Sbjct 2063481 ATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 2063422
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | ||| | || | || |||| || || |||||||||||| | |||||
Sbjct 2063421 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAG 2063362
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| || | || ||||| |||||||| || | |||||||||| |||||||||
Sbjct 2063361 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCTGACTACAAC 2063302
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| |||||| | || ||||| |||||||||| | || || |||
Sbjct 2063301 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGGC 2063254
Score = 114 bits (126), Expect = 1e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| || || || || | ||||| ||| |||| |||| || |||||
Sbjct 2063625 AAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAGCAGAGGCTGATTTTTGCTGGCAAG 2063566
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|||||||| || | |||||||||| |||||||||||||| |||||| | || |||||
Sbjct 2063565 CAGCTGGAAGATGGGCGCACCCTCTCTGACTACAACATCCAGAAGGAATCCACCCTGCAC 2063506
Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470
|||||||||| ||||||| ||
Sbjct 2063505 CTGGTGCTGCGCCTGAGAGGTGG 2063483
Score = 86.0 bits (94), Expect = 6e-12
Identities = 121/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || || || || || || || ||||| ||||||||| | || || ||| ||
Sbjct 2064775 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCC 2064716
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | ||| | || | || |||| ||||| || || || || | |||
Sbjct 2064715 AGTGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCTGAC 2064656
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 38410
|| ||| |||| || | || ||||| |||||||| || | |||||||||
Sbjct 2064655 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCT 2064606
>seq334
Length=7684865
Score = 91.5 bits (100), Expect = 1e-13
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454
||||||||| | ||||| || || |||||||| || |||||||| ||| |||||
Sbjct 6128461 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 6128520
Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509
|| || ||||| || || || || ||||||||||| || |||| ||||||||||
Sbjct 6128521 GTACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTCC 6128575
>seq890
Length=1787418
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976
|||| || ||| ||| ||||| ||| ||||||||| || ||||| || || | || |
Sbjct 1673510 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGACCCCTCTTCT 1673569
Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036
| ||||||||||| || || || ||||||||||||| ||| || || || || || |
Sbjct 1673570 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1673629
Query 133037 CCACCA 133042
| ||||
Sbjct 1673630 CAACCA 1673635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500153955989760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |