Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq2319 91.5 6e-13
seq2904 87.8 7e-12
>seq2319
Length=695921
Score = 91.5 bits (100), Expect = 6e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
||||| |||||||| | ||||| || || |||||||| || | || || || || ||
Sbjct 512783 GTTACCAATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCCACG 512724
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432
|||||||| ||| |||||| || | || || || ||||| || || || || ||||||
Sbjct 512723 AAAGATGCTGGAACTATTGCAGGGCTGAACGTCCTGCGAATCATCAACGAGCCCACAGCA 512664
Query 451433 GCTGCTCTAGCATATGGACT 451452
||||| | || ||||| ||
Sbjct 512663 GCTGCCATTGCCTATGGGCT 512644
>seq2904
Length=3194835
Score = 87.8 bits (96), Expect = 7e-12
Identities = 164/240 (68%), Gaps = 6/240 (3%)
Strand=Plus/Minus
Query 451898 GAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCT 451957
|| |||||||| || || || ||||| || ||||| || || || | || || |
Sbjct 1059793 GAGATTGTGCTGGTGGGTGGCTCTACCCGGATTCCCAAGATCCAGAAGCTGCTGCAGGAT 1059734
Query 451958 TATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGT 452017
| || || ||| | || |||||| | || |||||||| ||||| || ||||||
Sbjct 1059733 TTCTTCAATGGCAAAGAGCTCAACAAGAGCATCAACCCTGATGAGGCTGTGGCTTATGGT 1059674
Query 452018 GCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATTAGGAGATATT 452074
||||| || ||||||||||| || | || ||| | ||| || | ||| |
Sbjct 1059673 GCTGCTGTACAAGCAGCTATCCTCATGGG---AGACAAGTCTGAGAACGTGCAGGATCTC 1059617
Query 452075 CTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACT 452134
||| | | |||||||| ||||| || || || | || |||||||| ||| ||||||||
Sbjct 1059616 CTGCTGTTGGATGTAACTCCTCTGTCCCTGGGCATCGAGACAGCTGGAGGAGTGATGACT 1059557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975642103929512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |