Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2319 91.5 6e-13 seq2904 87.8 7e-12 >seq2319 Length=695921 Score = 91.5 bits (100), Expect = 6e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||||||| | ||||| || || |||||||| || | || || || || || Sbjct 512783 GTTACCAATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCCACG 512724 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| |||||| || | || || || ||||| || || || || |||||| Sbjct 512723 AAAGATGCTGGAACTATTGCAGGGCTGAACGTCCTGCGAATCATCAACGAGCCCACAGCA 512664 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| | || ||||| || Sbjct 512663 GCTGCCATTGCCTATGGGCT 512644 >seq2904 Length=3194835 Score = 87.8 bits (96), Expect = 7e-12 Identities = 164/240 (68%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 451898 GAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCT 451957 || |||||||| || || || ||||| || ||||| || || || | || || | Sbjct 1059793 GAGATTGTGCTGGTGGGTGGCTCTACCCGGATTCCCAAGATCCAGAAGCTGCTGCAGGAT 1059734 Query 451958 TATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGT 452017 | || || ||| | || |||||| | || |||||||| ||||| || |||||| Sbjct 1059733 TTCTTCAATGGCAAAGAGCTCAACAAGAGCATCAACCCTGATGAGGCTGTGGCTTATGGT 1059674 Query 452018 GCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATTAGGAGATATT 452074 ||||| || ||||||||||| || | || ||| | ||| || | ||| | Sbjct 1059673 GCTGCTGTACAAGCAGCTATCCTCATGGG---AGACAAGTCTGAGAACGTGCAGGATCTC 1059617 Query 452075 CTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACT 452134 ||| | | |||||||| ||||| || || || | || |||||||| ||| |||||||| Sbjct 1059616 CTGCTGTTGGATGTAACTCCTCTGTCCCTGGGCATCGAGACAGCTGGAGGAGTGATGACT 1059557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975642103929512