Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2904 253 3e-62 seq2319 145 1e-29 seq334 84.2 3e-11 >seq2904 Length=3194835 Score = 253 bits (280), Expect = 3e-62 Identities = 1022/1597 (64%), Gaps = 32/1597 (2%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| ||||| || || ||||| ||||| |||||||| || || Sbjct 1059200 TTCATCCTCTGCTTTGTACTTCTCTGCTTCTTGCACCATACGGTCAATGTCGTCCTTGCT 1059259 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| ||||| || || || ||||| | || |||| | ||| || | Sbjct 1059260 GAGGCGACCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTGCCCGTGCTCTTGTCCAC 1059319 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 ||||| || |||| |||||||| ||||| | || || | || | || || || Sbjct 1059320 GGCACTGACGTTCAGGATACCATTGGCATCTATGTCAAAAGTGACCTCGATCTGGGGGAC 1059379 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||||| ||||| | || || || |||| ||||| | || || || |||||||| | Sbjct 1059380 TCCCCTGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTATCCCT 1059439 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCG--CAGGTTGATTATCTT 6863 | | | | |||||||| || || | | | ||| | | ||||| | | Sbjct 1059440 TGTCATAGCCCTCTCACCTTCGTACACCTGGACCAGGACACTGTTCTGGTTGTCTGAGTA 1059499 Query 6864 GTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCG 6923 | || | |||| | || || || | || || || || || | | || | | Sbjct 1059500 G----GTGGTGAAGGTCTGAGTTTGTTTGGTGGGGATGGTGGTGTTGCGCTTGATGAGAG 1059555 Query 6924 GGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTA 6983 ||||| | || || || |||| || || |||||||| || || ||||| || | Sbjct 1059556 CAGTCATCACTCCTCCAGCTGTCTCGATGCCCAGGGACAGAGGAGTTACATCCAACAGCA 1059615 Query 6984 ACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCC 7043 || || || || || | || ||| | | ||| || ||||| || | || | Sbjct 1059616 GGAGATCCTGCACGTTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGTACAGCAGCAC 1059675 Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAAT 7103 | || || || |||||||| ||||| || | || || || ||||| || || || ||| Sbjct 1059676 CATAAGCCACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAAT 1059735 Query 7104 CCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCAT 7163 || | || | || || || || || || || || ||||| |||| || || || | Sbjct 1059736 CCTGCAGCAGCTTCTGGATCTTGGGAATCCGGGTAGAGCCACCCACCAGCACAATCTCCT 1059795 Query 7164 TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATT 7223 | | || |||| ||| | || || || | || || || || |||| Sbjct 1059796 GGATCTGGCCCTTGTCGAGCTTGGCATCACGCAGAGCCTTCTCCACCGGCTCCAGGGTGC 1059855 Query 7224 TACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAAT 7283 |||||| | ||| | || ||||||||||| ||||| |||||||| || ||||| | Sbjct 1059856 CACGGAAAAGGTCAGCATTGAGCTCCTCAAAACGGGCACGAGTAATGGAGGTGTAGAAGT 1059915 Query 7284 CAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTC 7343 ||| ||| || | | || ||||| |||||| | | |||| | || | || | Sbjct 1059916 CAATGCCCTCAAACAGAGAGTCAATCTCAATGCTGGCCTGTGTGGAGGAGCTGAGGGTGC 1059975 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403 ||||||| | |||||| || || || | || | | ||| ||| |||||| | ||| | Sbjct 1059976 GCTTTGCCCTCTCACAAGCTGTGCGCAGCCGCCTCACGGCTCGCTTGTTACCAGCAATGT 1060035 Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 | ||| || || || || || ||||| ||||| | | | || || | Sbjct 1060036 CACGCTTGTGCTTGCGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAAGT 1060095 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 | || |||||||| || ||||| || || || | || || ||||| || || | || | Sbjct 1060096 CCTCCCCACCCAAATGGGTATCGCCAGCAGTGGACTTTACCTCAAAAATCCCATCCTCGA 1060155 Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583 || | | | || ||||| || || || || ||||||||||| ||||| |||||| | | Sbjct 1060156 TGGTAAGGATGGAGACATCGAAAGTGCCCCCTCCCAGGTCAAAGATGAGCACGTTCTTCT 1060215 Query 7584 CGTC------GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | | | | ||||| || || || || |||||||| || || || || |||| Sbjct 1060216 CTCCAGCCCGGGTTCCCTTCTTGTCCAGGCCATAAGCGATAGCGGCTGCAGTGGGCTCAT 1060275 Query 7638 TAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 | || ||||| | ||| || || || | || || | || || || || || || || Sbjct 1060276 TGATGATACGCATCACA-TTGAGTCCTGTGATGGTGCCGGCGTCCTTGGTGGCCTGGCGC 1060334 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || || || ||||| ||||| ||||| | ||| || | | || || || ||| Sbjct 1060335 TGGGAGTCATTGAAGTATGCCGGCACCGTGATGACAGCATTCTGCACCTTGCACCCCAGA 1060394 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || || || || ||||| ||||| || ||||| || ||||| || | | | Sbjct 1060395 TAGGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCTG-GGAA 1060453 Query 7817 AACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 | || ||| | || || || | || || | | | |||| || || | || Sbjct 1060454 GAAGGTCTTCATCTCCCCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CTCCCTC 1060507 Query 7876 GATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 | ||| | | | ||||| ||||| || || ||| |||| |||| Sbjct 1060508 ATTCACCACACGGAAAGGCCAATGCTTCATGTCCGACTGCACCGTGGGGTCGTCGTACTT 1060567 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | || || || ||||| |||||||| | ||||| |||||||||| || ||||| Sbjct 1060568 GCGGCCAATGAGGCGCTTGGCATCAAAGATGGTGTTGGTGGGGTTCATTGCCACCTGGTT 1060627 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-G 8051 ||| || || |||||||| || || || || || || ||||| || || | |||| | Sbjct 1060628 CTTGGCAGCATCCCCGATGAGCCGCTCCGTA---TCGGTGAACGCCACATA-GCTGGGTG 1060683 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 | || || || || || ||||| || || || || || | ||| || |||| || | Sbjct 1060684 TGGTGCGGTTACCCTGATCGTTGGCGATGATCTCCACCTTGCCGTGCTGGAAGACACCCA 1060743 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||| || ||||| || || | ||| || ||||| || Sbjct 1060744 CGCAGGAGTACGTGGTGCCCAGATCGATGCCGATCGC 1060780 >seq2319 Length=695921 Score = 145 bits (160), Expect = 1e-29 Identities = 356/540 (66%), Gaps = 0/540 (0%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 ||||| || || || ||||| || ||||| || | || || || ||||| ||||| || Sbjct 511994 GCCCCATACGCCACAGCCTCGTCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCGTTGAAG 512053 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || | || || || ||||| || || || || || |||| ||||| Sbjct 512054 AAGTCCTGCAGCAGCTTCTGGATCTTGGGGATGCGCGTGGAGCCCCCCACCAGCACGATG 512113 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | ||| || || | ||| | ||| | || | || || || || |||| Sbjct 512114 TCGTGGATCTGCGACTTGTCCAGCTTGGCGTCCCTCAGGGCCTTCTCCACGGGGTCCAGG 512173 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| || ||||| || || || | ||| ||||| || ||| Sbjct 512174 GTGCCACGGAACAGGTCGGCGTTGAGCTCCTCGAAGCGAGCCCTGGTGATGGAGGTGTAG 512233 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || | ||| ||||| | || || || || ||| | | || | | || || | Sbjct 512234 AAGTCGATGCCCTCGTAGAGGGAGTCGATCTCGATGCTGGCCTGGGTGGAGGAGGACAGG 512293 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| |||||||| || || || || | || || | ||| ||| ||| || Sbjct 512294 GTGCGCTTGGCGCGCTCGCAGGCGGTGCGCAGGCGGCGCACGGCGCGCTTGTTCTCGCTG 512353 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| || || || || ||||| | |||||| | | | ||| Sbjct 512354 ATGTCCTTCTTGTGCTTGCGCTTGAACTCGGCGATGAAGTGGTTCACCATGCGGTTGTCG 512413 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||||| ||| || ||||| || || | ||| || || ||||| || || Sbjct 512414 AAGTCCTCCCCACCCAGGTGGGTGTCCCCTGCTGTGGATTTCACCTCGAAGATGCCATCT 512473 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 || ||| | | | || || ||||| || || || ||||||||||| ||||| |||||| Sbjct 512474 TCGATGGTCAGGATGGACACGTCAAAGGTGCCGCCGCCCAGGTCAAAGATGAGGACGTTC 512533 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || || || || || || || || || || || || || || || || || | Sbjct 512635 TTCTTGTCCAGCCCATAGGCAATGGCAGCTGCTGTGGGCTCGTTGATGATTCGCAGGACG 512694 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 ||||| || ||||||||| | ||||||||||| || || || || || ||||| || ||| Sbjct 512695 TTCAGCCCTGCAATAGTTCCAGCATCTTTCGTGGCCTGGCGCTGGGAGTCGTTGAAATAG 512754 Query 7715 GCCGGGACCGTTACGACCGC 7734 || ||||| || || || || Sbjct 512755 GCTGGGACAGTCACTACTGC 512774 >seq334 Length=7684865 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 115365 CATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACCTGGAAGTAACCCTCT 115424 ||||||| |||||| ||| |||||||||||| |||| | || || | ||| ||||| Sbjct 6125969 CATACCT-CATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCT 6126027 Query 115425 CTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAACACACGC 115484 ||||| | ||||||||| | |||| || || ||||| || ||||| ||| || Sbjct 6126028 TTTTTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGC 6126087 Query 115485 AAAGGCTAATAAACGTTC 115502 |||||||| || ||||| Sbjct 6126088 AAAGGCTACTACGCGTTC 6126105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635108871371760