Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq2904 253 3e-62
seq2319 145 1e-29
seq334 84.2 3e-11
>seq2904
Length=3194835
Score = 253 bits (280), Expect = 3e-62
Identities = 1022/1597 (64%), Gaps = 32/1597 (2%)
Strand=Plus/Plus
Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627
|||||| || |||| ||||| || || ||||| ||||| |||||||| || ||
Sbjct 1059200 TTCATCCTCTGCTTTGTACTTCTCTGCTTCTTGCACCATACGGTCAATGTCGTCCTTGCT 1059259
Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687
| | ||||| ||||| || || || ||||| | || |||| | ||| || |
Sbjct 1059260 GAGGCGACCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTGCCCGTGCTCTTGTCCAC 1059319
Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747
||||| || |||| |||||||| ||||| | || || | || | || || ||
Sbjct 1059320 GGCACTGACGTTCAGGATACCATTGGCATCTATGTCAAAAGTGACCTCGATCTGGGGGAC 1059379
Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807
||||| ||||| | || || || |||| ||||| | || || || |||||||| |
Sbjct 1059380 TCCCCTGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTATCCCT 1059439
Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCG--CAGGTTGATTATCTT 6863
| | | | |||||||| || || | | | ||| | | ||||| | |
Sbjct 1059440 TGTCATAGCCCTCTCACCTTCGTACACCTGGACCAGGACACTGTTCTGGTTGTCTGAGTA 1059499
Query 6864 GTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCG 6923
| || | |||| | || || || | || || || || || | | || | |
Sbjct 1059500 G----GTGGTGAAGGTCTGAGTTTGTTTGGTGGGGATGGTGGTGTTGCGCTTGATGAGAG 1059555
Query 6924 GGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTA 6983
||||| | || || || |||| || || |||||||| || || ||||| || |
Sbjct 1059556 CAGTCATCACTCCTCCAGCTGTCTCGATGCCCAGGGACAGAGGAGTTACATCCAACAGCA 1059615
Query 6984 ACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCC 7043
|| || || || || | || ||| | | ||| || ||||| || | || |
Sbjct 1059616 GGAGATCCTGCACGTTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGTACAGCAGCAC 1059675
Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAAT 7103
| || || || |||||||| ||||| || | || || || ||||| || || || |||
Sbjct 1059676 CATAAGCCACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAAT 1059735
Query 7104 CCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCAT 7163
|| | || | || || || || || || || || ||||| |||| || || || |
Sbjct 1059736 CCTGCAGCAGCTTCTGGATCTTGGGAATCCGGGTAGAGCCACCCACCAGCACAATCTCCT 1059795
Query 7164 TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATT 7223
| | || |||| ||| | || || || | || || || || ||||
Sbjct 1059796 GGATCTGGCCCTTGTCGAGCTTGGCATCACGCAGAGCCTTCTCCACCGGCTCCAGGGTGC 1059855
Query 7224 TACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAAT 7283
|||||| | ||| | || ||||||||||| ||||| |||||||| || ||||| |
Sbjct 1059856 CACGGAAAAGGTCAGCATTGAGCTCCTCAAAACGGGCACGAGTAATGGAGGTGTAGAAGT 1059915
Query 7284 CAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTC 7343
||| ||| || | | || ||||| |||||| | | |||| | || | || |
Sbjct 1059916 CAATGCCCTCAAACAGAGAGTCAATCTCAATGCTGGCCTGTGTGGAGGAGCTGAGGGTGC 1059975
Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403
||||||| | |||||| || || || | || | | ||| ||| |||||| | ||| |
Sbjct 1059976 GCTTTGCCCTCTCACAAGCTGTGCGCAGCCGCCTCACGGCTCGCTTGTTACCAGCAATGT 1060035
Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463
| ||| || || || || || ||||| ||||| | | | || || |
Sbjct 1060036 CACGCTTGTGCTTGCGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAAGT 1060095
Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523
| || |||||||| || ||||| || || || | || || ||||| || || | || |
Sbjct 1060096 CCTCCCCACCCAAATGGGTATCGCCAGCAGTGGACTTTACCTCAAAAATCCCATCCTCGA 1060155
Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583
|| | | | || ||||| || || || || ||||||||||| ||||| |||||| | |
Sbjct 1060156 TGGTAAGGATGGAGACATCGAAAGTGCCCCCTCCCAGGTCAAAGATGAGCACGTTCTTCT 1060215
Query 7584 CGTC------GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637
| | | | ||||| || || || || |||||||| || || || || ||||
Sbjct 1060216 CTCCAGCCCGGGTTCCCTTCTTGTCCAGGCCATAAGCGATAGCGGCTGCAGTGGGCTCAT 1060275
Query 7638 TAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
| || ||||| | ||| || || || | || || | || || || || || || ||
Sbjct 1060276 TGATGATACGCATCACA-TTGAGTCCTGTGATGGTGCCGGCGTCCTTGGTGGCCTGGCGC 1060334
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| || || || ||||| ||||| ||||| | ||| || | | || || || |||
Sbjct 1060335 TGGGAGTCATTGAAGTATGCCGGCACCGTGATGACAGCATTCTGCACCTTGCACCCCAGA 1060394
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| | || || || || ||||| ||||| || ||||| || ||||| || | | |
Sbjct 1060395 TAGGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCTG-GGAA 1060453
Query 7817 AACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875
| || ||| | || || || | || || | | | |||| || || | ||
Sbjct 1060454 GAAGGTCTTCATCTCCCCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CTCCCTC 1060507
Query 7876 GATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932
| ||| | | | ||||| ||||| || || ||| |||| ||||
Sbjct 1060508 ATTCACCACACGGAAAGGCCAATGCTTCATGTCCGACTGCACCGTGGGGTCGTCGTACTT 1060567
Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992
| || || || ||||| |||||||| | ||||| |||||||||| || |||||
Sbjct 1060568 GCGGCCAATGAGGCGCTTGGCATCAAAGATGGTGTTGGTGGGGTTCATTGCCACCTGGTT 1060627
Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-G 8051
||| || || |||||||| || || || || || || ||||| || || | |||| |
Sbjct 1060628 CTTGGCAGCATCCCCGATGAGCCGCTCCGTA---TCGGTGAACGCCACATA-GCTGGGTG 1060683
Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111
| || || || || || ||||| || || || || || | ||| || |||| || |
Sbjct 1060684 TGGTGCGGTTACCCTGATCGTTGGCGATGATCTCCACCTTGCCGTGCTGGAAGACACCCA 1060743
Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148
|||| || ||||| || || | ||| || ||||| ||
Sbjct 1060744 CGCAGGAGTACGTGGTGCCCAGATCGATGCCGATCGC 1060780
>seq2319
Length=695921
Score = 145 bits (160), Expect = 1e-29
Identities = 356/540 (66%), Gaps = 0/540 (0%)
Strand=Plus/Plus
Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099
||||| || || || ||||| || ||||| || | || || || ||||| ||||| ||
Sbjct 511994 GCCCCATACGCCACAGCCTCGTCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCGTTGAAG 512053
Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159
| ||| | || | || || || ||||| || || || || || |||| |||||
Sbjct 512054 AAGTCCTGCAGCAGCTTCTGGATCTTGGGGATGCGCGTGGAGCCCCCCACCAGCACGATG 512113
Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219
|| | | | ||| || || | ||| | ||| | || | || || || || ||||
Sbjct 512114 TCGTGGATCTGCGACTTGTCCAGCTTGGCGTCCCTCAGGGCCTTCTCCACGGGGTCCAGG 512173
Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279
|||||||| ||| || ||||| || || || | ||| ||||| || |||
Sbjct 512174 GTGCCACGGAACAGGTCGGCGTTGAGCTCCTCGAAGCGAGCCCTGGTGATGGAGGTGTAG 512233
Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339
|| || | ||| ||||| | || || || || ||| | | || | | || || |
Sbjct 512234 AAGTCGATGCCCTCGTAGAGGGAGTCGATCTCGATGCTGGCCTGGGTGGAGGAGGACAGG 512293
Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399
|| ||||| |||||||| || || || || | || || | ||| ||| ||| ||
Sbjct 512294 GTGCGCTTGGCGCGCTCGCAGGCGGTGCGCAGGCGGCGCACGGCGCGCTTGTTCTCGCTG 512353
Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459
|| || ||||| || || || || ||||| | |||||| | | | |||
Sbjct 512354 ATGTCCTTCTTGTGCTTGCGCTTGAACTCGGCGATGAAGTGGTTCACCATGCGGTTGTCG 512413
Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519
|| || || ||||||| ||| || ||||| || || | ||| || || ||||| || ||
Sbjct 512414 AAGTCCTCCCCACCCAGGTGGGTGTCCCCTGCTGTGGATTTCACCTCGAAGATGCCATCT 512473
Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579
|| ||| | | | || || ||||| || || || ||||||||||| ||||| ||||||
Sbjct 512474 TCGATGGTCAGGATGGACACGTCAAAGGTGCCGCCGCCCAGGTCAAAGATGAGGACGTTC 512533
Score = 86.0 bits (94), Expect = 8e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
||||| || || || || || || || || || || || || || || || || || |
Sbjct 512635 TTCTTGTCCAGCCCATAGGCAATGGCAGCTGCTGTGGGCTCGTTGATGATTCGCAGGACG 512694
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
||||| || ||||||||| | ||||||||||| || || || || || ||||| || |||
Sbjct 512695 TTCAGCCCTGCAATAGTTCCAGCATCTTTCGTGGCCTGGCGCTGGGAGTCGTTGAAATAG 512754
Query 7715 GCCGGGACCGTTACGACCGC 7734
|| ||||| || || || ||
Sbjct 512755 GCTGGGACAGTCACTACTGC 512774
>seq334
Length=7684865
Score = 84.2 bits (92), Expect = 3e-11
Identities = 102/138 (74%), Gaps = 1/138 (1%)
Strand=Plus/Plus
Query 115365 CATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACCTGGAAGTAACCCTCT 115424
||||||| |||||| ||| |||||||||||| |||| | || || | ||| |||||
Sbjct 6125969 CATACCT-CATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCT 6126027
Query 115425 CTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAACACACGC 115484
||||| | ||||||||| | |||| || || ||||| || ||||| ||| ||
Sbjct 6126028 TTTTTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGC 6126087
Query 115485 AAAGGCTAATAAACGTTC 115502
|||||||| || |||||
Sbjct 6126088 AAAGGCTACTACGCGTTC 6126105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635108871371760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |