Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq281 122 2e-22 >seq281 Length=2586918 Score = 122 bits (134), Expect = 2e-22 Identities = 162/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || ||||| || || || || ||||| || | || || Sbjct 2063261 CTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTG 2063320 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||| || |||||||| || || ||||| || | || |||||||| ||||| || Sbjct 2063321 CGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATTCCC 2063380 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || || || || || || |||||| || ||||||||||| ||| ||||| ||| Sbjct 2063381 TCCTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCCACCTCA 2063437 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || ||||| | ||||| Sbjct 2063438 AGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 2063481 Score = 104 bits (114), Expect = 5e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || ||||| || ||||| || || || || ||||| || | || || Sbjct 2063488 TCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGT 2063547 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| || || || || || | || ||||| ||||| || || Sbjct 2063548 GCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACC 2063607 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||| ||||| || || || ||| || |||||||||||||| Sbjct 2063608 TTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC 2063649 Score = 91.5 bits (100), Expect = 3e-13 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 194974 AGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGA 195033 || || | |||||| || |||||||| || || ||||| || | || ||||| ||||| Sbjct 2064606 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 2064665 Query 195034 ATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCC 195090 || ||||| ||||| || || || ||| || || ||||||||||| ||| ||| Sbjct 2064666 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTC---ACTGGGCTCC 2064722 Query 195091 ACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| | ||||| || |||| || || || || | ||||| Sbjct 2064723 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2064772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109438755287738