Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq281 122 2e-22
>seq281
Length=2586918
Score = 122 bits (134), Expect = 2e-22
Identities = 162/224 (72%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979
||||| | || || ||||| || ||||| || || || || ||||| || | || ||
Sbjct 2063261 CTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTG 2063320
Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039
| |||||| || |||||||| || || ||||| || | || |||||||| ||||| ||
Sbjct 2063321 CGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATTCCC 2063380
Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096
|| || || || || || |||||| || ||||||||||| ||| ||||| |||
Sbjct 2063381 TCCTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCCACCTCA 2063437
Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| | ||||| || |||| || || ||||| | |||||
Sbjct 2063438 AGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 2063481
Score = 104 bits (114), Expect = 5e-17
Identities = 120/162 (74%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || | || || ||||| || ||||| || || || || ||||| || | || ||
Sbjct 2063488 TCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGT 2063547
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| ||||||||| |||||||| || || || || || | || ||||| ||||| || ||
Sbjct 2063548 GCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACC 2063607
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080
||| ||||| || || || ||| || ||||||||||||||
Sbjct 2063608 TTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC 2063649
Score = 91.5 bits (100), Expect = 3e-13
Identities = 123/170 (72%), Gaps = 6/170 (4%)
Strand=Plus/Plus
Query 194974 AGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGA 195033
|| || | |||||| || |||||||| || || ||||| || | || ||||| |||||
Sbjct 2064606 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 2064665
Query 195034 ATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCC 195090
|| ||||| ||||| || || || ||| || || ||||||||||| ||| |||
Sbjct 2064666 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTC---ACTGGGCTCC 2064722
Query 195091 ACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||||||| | ||||| || |||| || || || || | |||||
Sbjct 2064723 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2064772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109438755287738
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |