Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq334 120 3e-22
seq890 111 2e-19
>seq334
Length=7684865
Score = 120 bits (132), Expect = 3e-22
Identities = 102/126 (81%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| |||||||| || | |||||||||||| || | |||||||| | |||||||||||
Sbjct 6125973 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTT 6126032
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||| || || || ||||| || ||||||||||| || ||||| || |||||||| |
Sbjct 6126033 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 6126092
Query 19103 CAACTA 19108
| ||||
Sbjct 6126093 CTACTA 6126098
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/124 (76%), Gaps = 1/124 (1%)
Strand=Plus/Plus
Query 19206 ATACATACG-CTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264
||||| || ||| | || ||| |||| || | || || | | ||||||||||||||
Sbjct 6127630 ATACAAACCTCTCCTTTGAATCCTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTG 6127689
Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324
|||| |||||||| || || ||||| || || || ||||| | |||||||| || ||||
Sbjct 6127690 AATGTATATTTTCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTA 6127749
Query 19325 CTTC 19328
||||
Sbjct 6127750 CTTC 6127753
>seq890
Length=1787418
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| || || || || ||||||||||| || || || |
Sbjct 1673510 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGACCCCTCTTCT 1673569
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| |
Sbjct 1673570 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1673629
Query 19103 CAACTAGTCTTTCTCC 19118
|||| | ||| || ||
Sbjct 1673630 CAACCACTCTCTCACC 1673645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562087622550960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |