Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq334 120 3e-22 seq890 111 2e-19 >seq334 Length=7684865 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||||||||| || | |||||||| | ||||||||||| Sbjct 6125973 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTT 6126032 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| || |||||||| | Sbjct 6126033 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 6126092 Query 19103 CAACTA 19108 | |||| Sbjct 6126093 CTACTA 6126098 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 19206 ATACATACG-CTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264 ||||| || ||| | || ||| |||| || | || || | | |||||||||||||| Sbjct 6127630 ATACAAACCTCTCCTTTGAATCCTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTG 6127689 Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 |||| |||||||| || || ||||| || || || ||||| | |||||||| || |||| Sbjct 6127690 AATGTATATTTTCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTA 6127749 Query 19325 CTTC 19328 |||| Sbjct 6127750 CTTC 6127753 >seq890 Length=1787418 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || || ||||||||||| || || || | Sbjct 1673510 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGACCCCTCTTCT 1673569 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 1673570 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1673629 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 1673630 CAACCACTCTCTCACC 1673645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562087622550960