Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq2693 114 1e-20
seq2715 87.8 1e-12
>seq2693
Length=3874444
Score = 114 bits (126), Expect = 1e-20
Identities = 122/161 (76%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
||||| ||||| || || |||||||||||||| || || |||||||| || ||||| ||
Sbjct 2854761 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 2854702
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || |||||||| || |||||||| ||||| || || || | || || |
Sbjct 2854701 ACTCCTAGACCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 2854642
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029
|| || ||||| || | || ||||||||||| | ||||||
Sbjct 2854641 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCAT 2854601
Score = 113 bits (124), Expect = 4e-20
Identities = 128/169 (76%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| |||||||| ||||||||||||||||| || ||||| ||||||| ||
Sbjct 2851134 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATC 2851075
Query 30210 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268
||||| || ||| |||| ||| || ||| |||| || || | || || || || |
Sbjct 2851074 ACCCTCCTCTCTGGTGCT-GAAACCTTGCTTATCCAGGAACTCACGCGACCCATTAGCAT 2851016
Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||| ||||| || || || | ||||||||||||| ||||| || ||
Sbjct 2851015 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 2850967
>seq2715
Length=3790167
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| |||||||||||||| || | || || |||||| | | ||| | ||||| || ||
Sbjct 3177308 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCTGGA 3177249
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| || ||| ||||||||||||| | ||||| || |||
Sbjct 3177248 ATGGAGAACCACGTTTTTTTACCCATTATCACTGCATTCTGTTTTCCT 3177201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408602590198622
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |