Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq2411 131 3e-25
seq2246 131 3e-25
seq2525 116 7e-21
>seq2411
Length=466381
Score = 131 bits (144), Expect = 3e-25
Identities = 161/220 (73%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 241408 GTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATT 241467
||| | ||| |||| ||| ||||| ||||| ||||| || || || | | |||||
Sbjct 187197 GTGGCTCAGCACCTTCTGCTTGAGCTGGGCGACCTGCTCGCGGAGCAGGCTGGCGGTGGA 187138
Query 241468 GGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCG 241527
|| || | | ||| | |||||| |||||| |||||||||||||| | ||| ||
Sbjct 187137 GGCGAGCTCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGCCGGGAGATCCG 187078
Query 241528 TTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTC 241587
||||| || | | |||||| |||| ||| || | |||||||| || | ||| |||||
Sbjct 187077 CTCCAGCTTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTTCCTCAGCCGCTTCCGTTC 187018
Query 241588 CGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
|||||||||||| ||||| ||||||||||| || |||
Sbjct 187017 CGCCTTGATGCGCTCCTGCGTGTCCATGTCGATGGGGGAC 186978
>seq2246
Length=973789
Score = 131 bits (144), Expect = 3e-25
Identities = 129/165 (78%), Gaps = 4/165 (2%)
Strand=Plus/Plus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
||||| |||| |||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 490308 GTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 490367
Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647
|| ||| |||| || |||||||||||||||||||||| || ||||| ||||
Sbjct 490368 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGG 490427
Query 213648 GACACCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCACCC 213690
||| | | | |||| |||||| | | |||||| |||||||
Sbjct 490428 GACTCGATGA--TGGCATACCAGAGCTGCTGGGCCTTCACCACCC 490470
Score = 125 bits (138), Expect = 1e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200
|| ||||| ||||| ||||||||| | | ||||||||| |||||| ||||||||||
Sbjct 486984 CCCTTGCTGACGGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCGGGCCAGCTCG 487043
Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260
||| |||| |||||| ||||||||||||| || || || | | |||||| ||
Sbjct 487044 CAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGC 487103
Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320
||||| | | | ||||| | | ||||| | ||| | || ||||| ||||| ||
Sbjct 487104 GCCTCGGCGCTCTCAAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACG 487163
Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352
|||||||||||||| | ||| | | |||| ||
Sbjct 487164 CCGATGCCGATGGGCCGGTGCCGCCGGTTGGA 487195
Score = 102 bits (112), Expect = 2e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977
|||||| || || ||||||||||| | ||| | ||| |||||||||||||||
Sbjct 485031 CTGGAACTCCCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 485090
Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037
||||||||| ||||| ||||| |||||| ||| || |||||||| | | ||||| ||
Sbjct 485091 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTTGGCATGGGGGAGATGAGGAGGCT 485150
Query 213038 GTTCCTCACTCCGT 213051
|||||| || ||||
Sbjct 485151 GTTCCTGACACCGT 485164
Score = 93.3 bits (102), Expect = 8e-14
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872
|||| || |||||| || || |||| ||| || || |||||||||||| | | | |
Sbjct 491559 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTAGCTCGCTGC 491618
Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932
|| || || | ||| || || || || || |||||||||||| ||||||||||
Sbjct 491619 TCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 491678
Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963
|||| |||||||||||| || || || ||||
Sbjct 491679 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 491709
Score = 91.5 bits (100), Expect = 3e-13
Identities = 99/129 (77%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755
|||||||||||| |||||||| ||||| | | ||||| || ||||| | | |||
Sbjct 482839 GTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGT 482898
Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGC-CGG 212814
| | ||||||| |||||||||||||||| ||| | || ||||| || ||||| | | |
Sbjct 482899 TTTTTGGGAGATCTCCCACACGGTCTTGTAGAGCTGCTTCAGGTCATC-GGGAATCTCAG 482957
Query 212815 GGATGTTCT 212823
|||||||||
Sbjct 482958 GGATGTTCT 482966
>seq2525
Length=232643
Score = 116 bits (128), Expect = 7e-21
Identities = 109/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548
||||||| ||||||| |||||||||||||| |||||||| ||||| || |||||||||||
Sbjct 179583 CTTGAGCGCCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCGCCGGCGGCA 179524
Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608
|||| ||| || | |||||| || || | ||| || || || || | || ||||||
Sbjct 179523 CTTGGAGGCGGCGATGCGGTTTCGCAGCCGCTTGCGCTCGGCTTTCAGCCGCTCCTGGCT 179464
Query 241609 CTCCATGTCGATCGGAGAC 241627
|||| ||| | ||| |||
Sbjct 179463 CTCCGCGTCCAGCGGCGAC 179445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931497704501760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |