Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2411 131 3e-25 seq2246 131 3e-25 seq2525 116 7e-21 >seq2411 Length=466381 Score = 131 bits (144), Expect = 3e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 241408 GTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATT 241467 ||| | ||| |||| ||| ||||| ||||| ||||| || || || | | ||||| Sbjct 187197 GTGGCTCAGCACCTTCTGCTTGAGCTGGGCGACCTGCTCGCGGAGCAGGCTGGCGGTGGA 187138 Query 241468 GGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCG 241527 || || | | ||| | |||||| |||||| |||||||||||||| | ||| || Sbjct 187137 GGCGAGCTCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGCCGGGAGATCCG 187078 Query 241528 TTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTC 241587 ||||| || | | |||||| |||| ||| || | |||||||| || | ||| ||||| Sbjct 187077 CTCCAGCTTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTTCCTCAGCCGCTTCCGTTC 187018 Query 241588 CGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||||||||| ||||| ||||||||||| || ||| Sbjct 187017 CGCCTTGATGCGCTCCTGCGTGTCCATGTCGATGGGGGAC 186978 >seq2246 Length=973789 Score = 131 bits (144), Expect = 3e-25 Identities = 129/165 (78%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 ||||| |||| |||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 490308 GTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 490367 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||||||||||| || ||||| |||| Sbjct 490368 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGG 490427 Query 213648 GACACCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | | |||| |||||| | | |||||| ||||||| Sbjct 490428 GACTCGATGA--TGGCATACCAGAGCTGCTGGGCCTTCACCACCC 490470 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 || ||||| ||||| ||||||||| | | ||||||||| |||||| |||||||||| Sbjct 486984 CCCTTGCTGACGGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCGGGCCAGCTCG 487043 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| |||||| ||||||||||||| || || || | | |||||| || Sbjct 487044 CAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGC 487103 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 ||||| | | | ||||| | | ||||| | ||| | || ||||| ||||| || Sbjct 487104 GCCTCGGCGCTCTCAAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACG 487163 Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 |||||||||||||| | ||| | | |||| || Sbjct 487164 CCGATGCCGATGGGCCGGTGCCGCCGGTTGGA 487195 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || || ||||||||||| | ||| | ||| ||||||||||||||| Sbjct 485031 CTGGAACTCCCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 485090 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| ||||| ||||| |||||| ||| || |||||||| | | ||||| || Sbjct 485091 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTTGGCATGGGGGAGATGAGGAGGCT 485150 Query 213038 GTTCCTCACTCCGT 213051 |||||| || |||| Sbjct 485151 GTTCCTGACACCGT 485164 Score = 93.3 bits (102), Expect = 8e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| || |||||| || || |||| ||| || || |||||||||||| | | | | Sbjct 491559 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTAGCTCGCTGC 491618 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || || | ||| || || || || || |||||||||||| |||||||||| Sbjct 491619 TCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 491678 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 491679 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 491709 Score = 91.5 bits (100), Expect = 3e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 |||||||||||| |||||||| ||||| | | ||||| || ||||| | | ||| Sbjct 482839 GTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGT 482898 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGC-CGG 212814 | | ||||||| |||||||||||||||| ||| | || ||||| || ||||| | | | Sbjct 482899 TTTTTGGGAGATCTCCCACACGGTCTTGTAGAGCTGCTTCAGGTCATC-GGGAATCTCAG 482957 Query 212815 GGATGTTCT 212823 ||||||||| Sbjct 482958 GGATGTTCT 482966 >seq2525 Length=232643 Score = 116 bits (128), Expect = 7e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||||||| ||||||| |||||||||||||| |||||||| ||||| || ||||||||||| Sbjct 179583 CTTGAGCGCCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCGCCGGCGGCA 179524 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| || | |||||| || || | ||| || || || || | || |||||| Sbjct 179523 CTTGGAGGCGGCGATGCGGTTTCGCAGCCGCTTGCGCTCGGCTTTCAGCCGCTCCTGGCT 179464 Query 241609 CTCCATGTCGATCGGAGAC 241627 |||| ||| | ||| ||| Sbjct 179463 CTCCGCGTCCAGCGGCGAC 179445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931497704501760