Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2246 95.1 2e-14 >seq2246 Length=973789 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| |||||| |||| || | | |||||| || || ||||||||||||||||||| Sbjct 490291 CCACCTCCTCCTTGCTGGTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 490350 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || ||| | ||| | ||||||||||||||| |||| Sbjct 490351 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 490410 Query 221850 CGCCAGTCTC 221859 ||||||||| Sbjct 490411 TGCCAGTCTC 490420 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || | || ||||||||| || |||||||| || || || || || Sbjct 491546 CTGGTTGGTTTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTC 491605 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 || | |||||||| || || |||| ||| ||| |||| |||||||| ||||| Sbjct 491606 CCTAGCTCGCTGCTCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTC 491665 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||||||||||||| |||| ||| | ||| || |||| || Sbjct 491666 CAAGTGCCACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 491709 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181 ||| ||||| || |||||||||||||| | ||| | ||| ||| | || ||||| Sbjct 485028 CACCTGGAACTCCCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGAT 485087 Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 | ||||||||||||||||||||| || ||| ||| || |||||||| | | || || Sbjct 485088 GGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTTGGCATGGGGGAGATGAGGAG 485147 Query 221242 ACTGTT 221247 ||||| Sbjct 485148 GCTGTT 485153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928809805772160