Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq2246 95.1 2e-14
>seq2246
Length=973789
Score = 95.1 bits (104), Expect = 2e-14
Identities = 99/130 (76%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789
||||||| |||||| |||| || | | |||||| || || |||||||||||||||||||
Sbjct 490291 CCACCTCCTCCTTGCTGGTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 490350
Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849
| ||||||| | || || ||| | ||| | ||||||||||||||| ||||
Sbjct 490351 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 490410
Query 221850 CGCCAGTCTC 221859
|||||||||
Sbjct 490411 TGCCAGTCTC 490420
Score = 89.7 bits (98), Expect = 1e-12
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078
|| |||| || || | || ||||||||| || |||||||| || || || || ||
Sbjct 491546 CTGGTTGGTTTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTC 491605
Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138
|| | |||||||| || || |||| ||| ||| |||| |||||||| |||||
Sbjct 491606 CCTAGCTCGCTGCTCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTC 491665
Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182
||||||||||||||| |||| ||| | ||| || |||| ||
Sbjct 491666 CAAGTGCCACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 491709
Score = 84.2 bits (92), Expect = 4e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181
||| ||||| || |||||||||||||| | ||| | ||| ||| | || |||||
Sbjct 485028 CACCTGGAACTCCCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGAT 485087
Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241
| ||||||||||||||||||||| || ||| ||| || |||||||| | | || ||
Sbjct 485088 GGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTTGGCATGGGGGAGATGAGGAG 485147
Query 221242 ACTGTT 221247
|||||
Sbjct 485148 GCTGTT 485153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928809805772160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |