Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1055 219 5e-52 seq2892 143 3e-29 seq114 87.8 2e-12 >seq1055 Length=1677871 Score = 219 bits (242), Expect = 5e-52 Identities = 656/1004 (65%), Gaps = 10/1004 (1%) Strand=Plus/Minus Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091 |||| ||| | | |||| |||| || || |||| |||| || || || |||||| Sbjct 334713 AGATACAGAGCTTTGTGCCGCAAATACTCTTCCAAGCATTTCACTGCAAAAGGGTCAACA 334654 Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151 || |||||| ||||| || || | ||||| ||| |||||||||||| || |||| Sbjct 334653 TCAGTGTCGAACTTATTAGCAAATAAGTGGTG---GTTTCGTAGGATCCAGTTCAAGTCT 334597 Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211 || || || || ||||| || || ||||| || || |||| || ||||| | || Sbjct 334596 CCTACTCCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGTGCA 334537 Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 ||||| | ||| |||||||| |||| ||||| || ||||||||||| | || | |||| Sbjct 334536 CCTTTGGACACATCACCTTCAAAGTATTGCCATTTGACAAACCTGGCCAGTGCATTCATG 334477 Query 160272 TCGGAGGTGTCGTATTTGTACATCAGG--GGAACGGCACCGGGAACGCCGGGCATACGCT 160329 || || || || |||| || | || | || ||||| || || | || || | || Sbjct 334476 TCAGAAACATCATACTTGT-CA-CTGGAAGAAAATGCACCTGGGACTTCAGGGATTCTCT 334419 Query 160330 GTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 | | || |||||||||| || || |||||||| || || || | ||| || ||||||| Sbjct 334418 GAATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTCGCCCACTCAATGAACT 334359 Query 160390 CTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACG 160449 | ||| |||| || || | || || ||| | || ||||| || | Sbjct 334358 TTAGTATTTTGCTGTTTTCTAGTACATATTCTACAAAGTTCCTGCTAACTACAAAATAGG 334299 Query 160450 CGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAG 160509 | ||||| || || | || | | ||| || | |||||| || ||||| Sbjct 334298 CACTGCCAGAAAAAACTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCT 334239 Query 160510 ACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCA 160569 | || | | | | | || | || |||||||| || || | |||| Sbjct 334238 TTATTTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCA 334179 Query 160570 TGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTA 160629 | ||| || || | ||||| |||| | || | ||| | | || || || || Sbjct 334178 TTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCT 334119 Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC 160689 |||| ||||| | |||||||| |||| || | |||||| | ||| ||||| || | | Sbjct 334118 GGTTGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGGTATTTCCAGTTTGAAC 334059 Query 160690 TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749 | || || || ||||||| ||||| ||||| ||||| | |||||| ||||| | Sbjct 334058 TTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCTTGCACTCTGCTCCATGAAGCAT 333999 Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809 | || || |||||| | |||| | |||||| ||||| ||||| || || |||||| Sbjct 333998 ATACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCT 333939 Query 160810 CCACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTC 160868 ||| | ||| || || || | | |||| ||| || || | |||||| | ||| Sbjct 333938 TCACAG-CAGCAAAAAATGATTCTGGAGACTTTTTGTCTACATGAATGCAATAAAAATTC 333880 Query 160869 TGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACG 160928 || || | ||||| | || || | || || | |||||| || || |||| | ||| Sbjct 333879 TGTGGAACATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACA 333820 Query 160929 ATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTT 160988 || ||||| || || ||||| || | || ||| || || | | | | ||| || Sbjct 333819 ATTGAGTAAGCAATTGGAAATTCTGCTTCTTCGTTGCTGAGAGGTTCCATAATGTATTTC 333760 Query 160989 CGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 | |||||| | || | |||| || |||||||| ||||| Sbjct 333759 CTAGTCTTGGTGAAGGAGGCACAGTCTGCAGTCATGTTAATATA 333716 >seq2892 Length=3222183 Score = 143 bits (158), Expect = 3e-29 Identities = 243/350 (69%), Gaps = 4/350 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| ||||| | || |||||||| |||| ||| |||| || || |||||| | Sbjct 383755 TGTGGCGCAGGTACTCCTCCAGACACTGGATGGCCGCATCGTCCACCTCGGGGTCGAACT 383696 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || |||||||| | ||| || |||||| ||||||| || |||| | | Sbjct 383695 TGTTGGCCAAGAGATGGTGC---TGCTGCAGCATCCAGGGCACGTCGCCCACCCCGTAGA 383639 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||||| ||| || ||| |||| |||| |||||||| | || || || | | | Sbjct 383638 TGCAGATGGAGCGCTGGTGGCGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTTGGTGATAT 383579 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 |||| || ||||| |||||| || | | || | || | |||||| ||| | | Sbjct 383578 CACCCTCCAGGTACTCCCACTTGACCAGGCGGGGAAGGGCGTTCATGTCCGAGAGCTGGA 383519 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| | |||||| | | || || ||||| ||||| || | ||||||||||| | Sbjct 383518 ACTTGTCGCTGAGGGGAGTGCCCCCCGGCACGCCCGGCATGCGGTTCAGGGTGGCCCAGA 383459 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCG 160394 || ||||| |||||||| ||||||| ||||| || | ||||| |||| Sbjct 383458 CGTACTCGTCAGGGCTGTAGCTGTCCTTGGACCACTCGAGGAACT-TCCG 383410 >seq114 Length=7871726 Score = 87.8 bits (96), Expect = 2e-12 Identities = 352/547 (64%), Gaps = 10/547 (2%) Strand=Plus/Plus Query 176211 TTGTTTGTATCTAGTATATGTAGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTA 176270 || ||| | || || || | ||||||| | | || || | || ||| | |||| | Sbjct 1896526 TTATTTTTGTCAAGCATCAGAAGATATTCTGCCAGCTCTCTGGGGGAGAGAAAATCTTCC 1896585 Query 176271 ACATGTATAAATGCGTGTGGTGGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAA 176330 |||||||| || | || || ||||||||| ||||||||||||| |||||| || || | Sbjct 1896586 ACATGTATGAAAGAGTCTGCTGGAATGTAATTTTCATAATTTTCTCTGGAAGGGCCCAGT 1896645 Query 176331 ACTATTGGTACGGTACGTGCTAATAATGAGC--GGTAGATCTTTTCTGAGATGTAGTCAG 176388 || | |||||| | | || | | |||| ||||| || || | ||||| || Sbjct 1896646 ACAACTGGTACTGATCCAGCCA--GAAGAGCATTGTAGAGTTTCTCAGTAATGTAATCTT 1896703 Query 176389 TGTGAATTGAGTTTTCAAAAGCTAAATAGAACTTACATGAGCCTAACAATGGTATTAGGT 176448 |||| ||||| |||||||| | | ||||| || || | | | ||| || | || Sbjct 1896704 TGTGGATTGAATTTTCAAAGGAAAGGTAGAATTTGCAGGTGGAGATAGTTGGAATCAAGT 1896763 Query 176449 CCGGATTGGAGATGTGGTTTCCAACAGCATTGCCGTATACGTGTNNNNNNNNATATTTTT 176508 | | || || || ||| | || ||| | ||| |||| || | ||| Sbjct 1896764 TCTTGTCATTGACGTAGTCTCCGA-AGGCTTGTC-CATAGGTGTGGATTTCAATGTATTT 1896821 Query 176509 G-TAA-CTCCATGTAATATTGCGATCTGACGTAATCTGGGTTCCAATTGCTTACTACCCA 176566 | ||| ||| ||||||| | || ||| || |||||||| || || || ||||| Sbjct 1896822 GCTAAGCTCATTGTAATACTTGACTCGAGCGTGCTCAGGGTTCCAGTTACTCACAACCCA 1896881 Query 176567 ACATATGAGTTTATCCTTTTGTGGGATCCGTGATGTAGTGGTAGTATTTTTAATAATCAA 176626 ||| | | || ||||| ||| | |||| || | | | || ||| | Sbjct 1896882 ACAGACCAAGTTTTCCTTACTTGGTACTTCAAATGTGAAGGAACTGGTGCCAACCATC-A 1896940 Query 176627 TGAA-CCATAAGGTACAGTGATATCTGAATCCTGTCTATAAGTTACTGTAATATTAAAGA 176685 |||| |||||||| || |||||||||||| | | ||||| | || | ||||| | Sbjct 1896941 TGAAGCCATAAGGCACCTGGATATCTGAATCACGCCGGTAAGTCAGGGTCAGGTTAAAAA 1897000 Query 176686 GATGTTCCAAATCTATCTTTTTAGGACTGTTACTGGGGGATTCAAAATTTATCCAGATCC 176745 | ||||| | | |||||| ||| | | | | || || || || || ||||| |||| Sbjct 1897001 GGTGTTCAATGCCACTCTTTTGTGGAGTATGAGTTGGAGACTCCAAGTTCATCCAAATCC 1897060 Query 176746 ATTTTTG 176752 | || || Sbjct 1897061 ACTTCTG 1897067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577197453266640