Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq1055 219 5e-52
seq2892 143 3e-29
seq114 87.8 2e-12
>seq1055
Length=1677871
Score = 219 bits (242), Expect = 5e-52
Identities = 656/1004 (65%), Gaps = 10/1004 (1%)
Strand=Plus/Minus
Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091
|||| ||| | | |||| |||| || || |||| |||| || || || ||||||
Sbjct 334713 AGATACAGAGCTTTGTGCCGCAAATACTCTTCCAAGCATTTCACTGCAAAAGGGTCAACA 334654
Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151
|| |||||| ||||| || || | ||||| ||| |||||||||||| || ||||
Sbjct 334653 TCAGTGTCGAACTTATTAGCAAATAAGTGGTG---GTTTCGTAGGATCCAGTTCAAGTCT 334597
Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211
|| || || || ||||| || || ||||| || || |||| || ||||| | ||
Sbjct 334596 CCTACTCCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGTGCA 334537
Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271
||||| | ||| |||||||| |||| ||||| || ||||||||||| | || | ||||
Sbjct 334536 CCTTTGGACACATCACCTTCAAAGTATTGCCATTTGACAAACCTGGCCAGTGCATTCATG 334477
Query 160272 TCGGAGGTGTCGTATTTGTACATCAGG--GGAACGGCACCGGGAACGCCGGGCATACGCT 160329
|| || || || |||| || | || | || ||||| || || | || || | ||
Sbjct 334476 TCAGAAACATCATACTTGT-CA-CTGGAAGAAAATGCACCTGGGACTTCAGGGATTCTCT 334419
Query 160330 GTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389
| | || |||||||||| || || |||||||| || || || | ||| || |||||||
Sbjct 334418 GAATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTCGCCCACTCAATGAACT 334359
Query 160390 CTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACG 160449
| ||| |||| || || | || || ||| | || ||||| || |
Sbjct 334358 TTAGTATTTTGCTGTTTTCTAGTACATATTCTACAAAGTTCCTGCTAACTACAAAATAGG 334299
Query 160450 CGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAG 160509
| ||||| || || | || | | ||| || | |||||| || |||||
Sbjct 334298 CACTGCCAGAAAAAACTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCT 334239
Query 160510 ACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCA 160569
| || | | | | | || | || |||||||| || || | ||||
Sbjct 334238 TTATTTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCA 334179
Query 160570 TGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTA 160629
| ||| || || | ||||| |||| | || | ||| | | || || || ||
Sbjct 334178 TTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCT 334119
Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC 160689
|||| ||||| | |||||||| |||| || | |||||| | ||| ||||| || | |
Sbjct 334118 GGTTGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGGTATTTCCAGTTTGAAC 334059
Query 160690 TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749
| || || || ||||||| ||||| ||||| ||||| | |||||| ||||| |
Sbjct 334058 TTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCTTGCACTCTGCTCCATGAAGCAT 333999
Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809
| || || |||||| | |||| | |||||| ||||| ||||| || || ||||||
Sbjct 333998 ATACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCT 333939
Query 160810 CCACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTC 160868
||| | ||| || || || | | |||| ||| || || | |||||| | |||
Sbjct 333938 TCACAG-CAGCAAAAAATGATTCTGGAGACTTTTTGTCTACATGAATGCAATAAAAATTC 333880
Query 160869 TGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACG 160928
|| || | ||||| | || || | || || | |||||| || || |||| | |||
Sbjct 333879 TGTGGAACATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACA 333820
Query 160929 ATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTT 160988
|| ||||| || || ||||| || | || ||| || || | | | | ||| ||
Sbjct 333819 ATTGAGTAAGCAATTGGAAATTCTGCTTCTTCGTTGCTGAGAGGTTCCATAATGTATTTC 333760
Query 160989 CGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032
| |||||| | || | |||| || |||||||| |||||
Sbjct 333759 CTAGTCTTGGTGAAGGAGGCACAGTCTGCAGTCATGTTAATATA 333716
>seq2892
Length=3222183
Score = 143 bits (158), Expect = 3e-29
Identities = 243/350 (69%), Gaps = 4/350 (1%)
Strand=Plus/Minus
Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104
|||| ||||| | || |||||||| |||| ||| |||| || || |||||| |
Sbjct 383755 TGTGGCGCAGGTACTCCTCCAGACACTGGATGGCCGCATCGTCCACCTCGGGGTCGAACT 383696
Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164
| || || || |||||||| | ||| || |||||| ||||||| || |||| | |
Sbjct 383695 TGTTGGCCAAGAGATGGTGC---TGCTGCAGCATCCAGGGCACGTCGCCCACCCCGTAGA 383639
Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224
||||| ||| || ||| |||| |||| |||||||| | || || || | | |
Sbjct 383638 TGCAGATGGAGCGCTGGTGGCGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTTGGTGATAT 383579
Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284
|||| || ||||| |||||| || | | || | || | |||||| ||| | |
Sbjct 383578 CACCCTCCAGGTACTCCCACTTGACCAGGCGGGGAAGGGCGTTCATGTCCGAGAGCTGGA 383519
Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344
| |||| | |||||| | | || || ||||| ||||| || | ||||||||||| |
Sbjct 383518 ACTTGTCGCTGAGGGGAGTGCCCCCCGGCACGCCCGGCATGCGGTTCAGGGTGGCCCAGA 383459
Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCG 160394
|| ||||| |||||||| ||||||| ||||| || | ||||| ||||
Sbjct 383458 CGTACTCGTCAGGGCTGTAGCTGTCCTTGGACCACTCGAGGAACT-TCCG 383410
>seq114
Length=7871726
Score = 87.8 bits (96), Expect = 2e-12
Identities = 352/547 (64%), Gaps = 10/547 (2%)
Strand=Plus/Plus
Query 176211 TTGTTTGTATCTAGTATATGTAGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTA 176270
|| ||| | || || || | ||||||| | | || || | || ||| | |||| |
Sbjct 1896526 TTATTTTTGTCAAGCATCAGAAGATATTCTGCCAGCTCTCTGGGGGAGAGAAAATCTTCC 1896585
Query 176271 ACATGTATAAATGCGTGTGGTGGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAA 176330
|||||||| || | || || ||||||||| ||||||||||||| |||||| || || |
Sbjct 1896586 ACATGTATGAAAGAGTCTGCTGGAATGTAATTTTCATAATTTTCTCTGGAAGGGCCCAGT 1896645
Query 176331 ACTATTGGTACGGTACGTGCTAATAATGAGC--GGTAGATCTTTTCTGAGATGTAGTCAG 176388
|| | |||||| | | || | | |||| ||||| || || | ||||| ||
Sbjct 1896646 ACAACTGGTACTGATCCAGCCA--GAAGAGCATTGTAGAGTTTCTCAGTAATGTAATCTT 1896703
Query 176389 TGTGAATTGAGTTTTCAAAAGCTAAATAGAACTTACATGAGCCTAACAATGGTATTAGGT 176448
|||| ||||| |||||||| | | ||||| || || | | | ||| || | ||
Sbjct 1896704 TGTGGATTGAATTTTCAAAGGAAAGGTAGAATTTGCAGGTGGAGATAGTTGGAATCAAGT 1896763
Query 176449 CCGGATTGGAGATGTGGTTTCCAACAGCATTGCCGTATACGTGTNNNNNNNNATATTTTT 176508
| | || || || ||| | || ||| | ||| |||| || | |||
Sbjct 1896764 TCTTGTCATTGACGTAGTCTCCGA-AGGCTTGTC-CATAGGTGTGGATTTCAATGTATTT 1896821
Query 176509 G-TAA-CTCCATGTAATATTGCGATCTGACGTAATCTGGGTTCCAATTGCTTACTACCCA 176566
| ||| ||| ||||||| | || ||| || |||||||| || || || |||||
Sbjct 1896822 GCTAAGCTCATTGTAATACTTGACTCGAGCGTGCTCAGGGTTCCAGTTACTCACAACCCA 1896881
Query 176567 ACATATGAGTTTATCCTTTTGTGGGATCCGTGATGTAGTGGTAGTATTTTTAATAATCAA 176626
||| | | || ||||| ||| | |||| || | | | || ||| |
Sbjct 1896882 ACAGACCAAGTTTTCCTTACTTGGTACTTCAAATGTGAAGGAACTGGTGCCAACCATC-A 1896940
Query 176627 TGAA-CCATAAGGTACAGTGATATCTGAATCCTGTCTATAAGTTACTGTAATATTAAAGA 176685
|||| |||||||| || |||||||||||| | | ||||| | || | ||||| |
Sbjct 1896941 TGAAGCCATAAGGCACCTGGATATCTGAATCACGCCGGTAAGTCAGGGTCAGGTTAAAAA 1897000
Query 176686 GATGTTCCAAATCTATCTTTTTAGGACTGTTACTGGGGGATTCAAAATTTATCCAGATCC 176745
| ||||| | | |||||| ||| | | | | || || || || || ||||| ||||
Sbjct 1897001 GGTGTTCAATGCCACTCTTTTGTGGAGTATGAGTTGGAGACTCCAAGTTCATCCAAATCC 1897060
Query 176746 ATTTTTG 176752
| || ||
Sbjct 1897061 ACTTCTG 1897067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577197453266640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |