Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq890 86.0 7e-12 >seq890 Length=1787418 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGG 65145 |||| ||||| ||||| || |||||||| || || || || ||| ||||| | |||| Sbjct 1673632 TTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTT-TGCTGCTATATTTTGG 1673574 Query 65146 TTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGAT 65205 |||||||| ||||||| ||||| || | ||||| |||||||||||| | ||||| Sbjct 1673573 CTGAAGAAGAGGGGTCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 1673514 Query 65206 GAGG 65209 |||| Sbjct 1673513 GAGG 1673510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596547124240320