Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2904 333 3e-86 seq1378 131 2e-25 seq281 125 9e-24 seq2319 104 3e-17 seq2926 98.7 1e-15 seq2411 98.7 1e-15 seq2371 87.8 2e-12 >seq2904 Length=3194835 Score = 333 bits (368), Expect = 3e-86 Identities = 1043/1594 (65%), Gaps = 31/1594 (2%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || |||||| | || || || ||||| || || ||||| | || | | Sbjct 1060780 GCGATCGGCATCGATCTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCACGGCAAG 1060721 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | || || || || ||||| || || || || || || || || Sbjct 1060720 GTGGAGATCATCGCCAACGATCAGGGTAACCGCACCACACCCAGCTATGTGGCGTTCACC 1060661 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || ||||| || || || ||| || |||||||| | ||| Sbjct 1060660 GATACGGAGCGGCTCATCGGGGATGCTGCCAAGAACCAGGTGGCAATGAACCCCACCAAC 1060601 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || ||||| || ||||| ||||||| || | || || Sbjct 1060600 ACCATCTTTGATGCCAAGCGCCTCATTGGCCGCAAGTACGACGACCCCACGGTGCAGTCG 1060541 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| | ||| ||| || || || || | ||||| | | | | Sbjct 1060540 GACATGAAGCATTGGCCTTTCCGTGTGGTGAA---TGAGGGAGGCAAGCCCAAGGTGCAG 1060484 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTT 195657 || || | | || |||| ||| | || |||| || || || || |||||| | Sbjct 1060483 GTGGAGTACAAGGGGGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTGCT 1060425 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTT-TCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | ||||||||||||| ||| || | | || |||| || ||| | |||| || Sbjct 1060424 CACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGTGCAAG-GTGCAGAATGCTGTCA 1060366 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | || || || || ||||||| ||| || || || ||||| || |||||||| | | | Sbjct 1060365 TCACGGTGCCGGCATACTTCAATGACTCCCAGCGCCAGGCCACCAAGGACGCCGGCACCA 1060306 Query 195777 TTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 | | || || || ||| | | || |||||||| || || || || || || |||||| Sbjct 1060305 TCACAGGACTCAA-TGTGATGCGTATCATCAATGAGCCCACTGCAGCCGCTATCGCTTAT 1060247 Query 195836 GGTCTGGACAAGAAC--AA----GGACGAAGATAAAAATGTATTGATCTTTGATCTCGGT 195889 || ||||||||||| || || | ||| || || || | |||||||| || || Sbjct 1060246 GGCCTGGACAAGAAGGGAACCCGGGCTGGAGAGAAGAACGTGCTCATCTTTGACCTGGGA 1060187 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCT 195949 || || || || |||||||| | || | || || | ||| || || || |||||| | Sbjct 1060186 GGGGGCACTTTCGATGTCTCCATCCTTACCATCGAGGATGGGATTTTTGAGGTAAAGTCC 1060127 Query 195950 ACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTT 196008 |||||||| ||||| ||| | ||||| || || || || || | | || ||| Sbjct 1060126 ACTGCTGGCGATACCCATTTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCACTTT 1060067 Query 196009 GTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCG 196068 || || || ||| || ||| | ||| || ||| |||| || | || | | Sbjct 1060066 GTG-GAAGAATTCAAGCGCAAGCACAAGCGTGACATTGCTGGTAACAAGCGAGCCGTGAG 1060008 Query 196069 TCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAAT 196128 ||||| | || || ||||| | || || || || ||| || | | || | | Sbjct 1060007 GCGGCTGCGCACAGCTTGTGAGAGGGCAAAGCGCACCCTCAGCTCCTCCACACAGGCCAG 1059948 Query 196129 GGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACG 196188 |||||||||| || ||||||| || ||||||||||| || | ||||| ||||| || Sbjct 1059947 CATTGAGATTGACTCTCTGTTTGAGGGCATTGACTTCTACACCTCCATTACTCGTGCCCG 1059888 Query 196189 TTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACT 196248 |||||| ||| | || |||| | || | |||| || || || | | || Sbjct 1059887 TTTTGAGGAGCTCAATGCTGACCTTTTCCGTGGCACCCTGGAGCCGGTGGAGAAGGCTCT 1059828 Query 196249 TCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAAC 196308 ||||| || ||| | || ||| || | | || ||||| || ||||| || || || Sbjct 1059827 GCGTGATGCCAAGCTCGACAAGGGCCAGATCCAGGAGATTGTGCTGGTGGGTGGCTCTAC 1059768 Query 196309 CCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAA 196368 ||| ||||| ||||| || || |||| ||||||||| ||||| | ||||| Sbjct 1059767 CCGGATTCCCAAGATCCAGAAGCTGCTGCAGGATTTCTTCAATGGCAAAGAGCTCAACAA 1059708 Query 196369 AACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTC 196428 | |||||||| ||||| || || ||||||||||| || || || || ||||| ||| Sbjct 1059707 GAGCATCAACCCTGATGAGGCTGTGGCTTATGGTGCTGCTGTACAAGCAGCTAT--CCTC 1059650 Query 196429 AGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATC 196485 | | | ||||| | | ||||| || ||||| ||||| | ||||| | || | || Sbjct 1059649 ATG-GGAGACAAGTCTGAGAACGTGCAGGATCTCCTGCTGTTGGATGTAACTCCTCTGTC 1059591 Query 196486 CCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTAT 196545 |||||| | || ||||| || || || |||||| | || | | ||||| || || Sbjct 1059590 CCTGGGCATCGAGACAGCTGGAGGAGTGATGACTGCTCTCATCAAGCGCAACACCACCAT 1059531 Query 196546 TCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTCATA 196604 || || || | || ||| | || || || || || || | || |||| | Sbjct 1059530 CCCCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAACA-GTGTCCTGG 1059472 Query 196605 TTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTT 196661 | || || || |||| |||| ||| || ||| ||||||| | | || || | | Sbjct 1059471 TCCAGGTGTACGAAGGTGAGAGGGCT---ATGACAAGGGATAACAACTTGCTGGGCAAGT 1059415 Query 196662 TCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCG 196721 | || | || || || || | |||||||| || || || ||||| | || || | Sbjct 1059414 TTGACCTAACAGGCATCCCCCCAGCACCCAGGGGAGTCCCCCAGATCGAGGTCACTTTTG 1059355 Query 196722 ATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTG 196781 | ||||| || ||||| || || ||||||| || | ||||||| | ||||| Sbjct 1059354 ACATAGATGCCAATGGTATCCTGAACGTCAGTGCCGTGGACAAGAGCACGGGCAAGGAGA 1059295 Query 196782 AAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGG 196841 | ||||| || |||||||||||||| || || ||||| || ||||| ||||||| Sbjct 1059294 ACAAGATCACCATCACCAATGACAAGGGTCGCCTCAGCAAGGACGACATTGACCGTATGG 1059235 Query 196842 TTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 | ||||| || || ||||||| | ||| || || Sbjct 1059234 TGCAAGAAGCAGAGAAGTACAAAGCAGAGGATGA 1059201 >seq1378 Length=1476964 Score = 131 bits (144), Expect = 2e-25 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| ||||| || || |||||||| ||||||||| | Sbjct 1379759 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1379700 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || ||||||||||||| || || ||||||||||| || || || ||| Sbjct 1379699 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 1379640 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGA 172016 || | || || |||||||| || ||||| ||||| Sbjct 1379639 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 1379605 >seq281 Length=2586918 Score = 125 bits (138), Expect = 9e-24 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || |||||||| ||||| ||| | Sbjct 2064772 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 2064713 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||| || || |||||||| || || || || ||| Sbjct 2064712 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCTGACCAG 2064653 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCT 172028 || | || || |||||||| || ||||| || ||||| || ||||| Sbjct 2064652 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCT 2064606 Score = 116 bits (128), Expect = 5e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||| || || |||||||| || || || || ||| Sbjct 2063649 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAG 2063590 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || ||||||||||| || ||||| |||||||| || |||||| |||| |||||| Sbjct 2063589 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 2063530 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||| || || || ||||| || || Sbjct 2063529 ATCCAGAAGGAATCCACCCTGCACCTGGTGCT 2063498 >seq2319 Length=695921 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 ||||||| |||||||| || || || |||| || || || || ||||| || || || | Sbjct 512776 ATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCCACGAAAGATG 512717 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| ||||||| || || ||| || |||| ||||| || || ||||| ||||| | Sbjct 512716 CTGGAACTATTGCAGGGCTGAACGTCCTGCGAATCATCAACGAGCCCACAGCAGCTGCCA 512657 Query 195828 TTGCTTATGGTCTGGACAAGAA 195849 |||| ||||| ||||||||||| Sbjct 512656 TTGCCTATGGGCTGGACAAGAA 512635 >seq2926 Length=3227616 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/230 (69%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 || |||||||| |||| ||||| | || ||||| ||||||||||||| ||| | || Sbjct 142553 ATACAAATCTTCATGAAGACCCTCATGGGGAAAACCATCACCCTCGAGGCTGAACCTTCT 142612 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || | | || || | |||| || ||| |||| ||||| || | ||||| Sbjct 142613 GATTCTACAGAAAATGT--------AGATCCAGGATGAGGAGGGCATCCCTCGGAATCAG 142664 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || |||||||| || ||||| || |||||| | || | | | |||||| Sbjct 142665 CAGCGGCTGATCTTTGCTGGGAAGCAGCTGGAGGATGGATGCACATTGTCCAACTACAAC 142724 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 || || | || || || || ||||| | || || |||| |||||||| Sbjct 142725 ATTAAACAAGAATCCACCCTTCACCTGGGGCTGAGACTTCATGGTGGTGC 142774 >seq2411 Length=466381 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || ||||| |||||||||||||| ||| | Sbjct 42837 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAAACCATCACCCTCGAGGTGGAGCCCAAT 42778 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| | ||||||||||| || || |||||||| Sbjct 42777 GACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGG 42734 >seq2371 Length=4823497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 |||||| ||||| ||||||||||| ||||||||| | || | ||| || || | | Sbjct 4015096 AACAGCTGCTGCCATTGCTTATGGACTGGACAAG---AGAGAGGGAGAGAAGAACATCCT 4015040 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | || || || || ||||| || |||||||| || || |||| ||||| || | Sbjct 4015039 TGTATTCGACCTGGGCGGTGGAACTTTTGATGTGTCCCTCCTCACAATTGACAACGGAGT 4014980 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| ||||||| ||| || ||||| || ||||| ||||| || || Sbjct 4014979 CTTTGAAGTGGTGGCTACTAATGGGGACACTCACCTGGGTGGAGAAGACTTTGA 4014926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657837615034080