Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq2904 333 3e-86
seq1378 131 2e-25
seq281 125 9e-24
seq2319 104 3e-17
seq2926 98.7 1e-15
seq2411 98.7 1e-15
seq2371 87.8 2e-12
>seq2904
Length=3194835
Score = 333 bits (368), Expect = 3e-86
Identities = 1043/1594 (65%), Gaps = 31/1594 (2%)
Strand=Plus/Minus
Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358
|| || || |||||| | || || || ||||| || || ||||| | || | |
Sbjct 1060780 GCGATCGGCATCGATCTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCACGGCAAG 1060721
Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418
|| ||||| ||| | || || || || ||||| || || || || || || || ||
Sbjct 1060720 GTGGAGATCATCGCCAACGATCAGGGTAACCGCACCACACCCAGCTATGTGGCGTTCACC 1060661
Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478
|||| || || ||| | || ||||| || || || ||| || |||||||| | |||
Sbjct 1060660 GATACGGAGCGGCTCATCGGGGATGCTGCCAAGAACCAGGTGGCAATGAACCCCACCAAC 1060601
Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538
|| ||||||| || ||||| || ||||| ||||||| || | || ||
Sbjct 1060600 ACCATCTTTGATGCCAAGCGCCTCATTGGCCGCAAGTACGACGACCCCACGGTGCAGTCG 1060541
Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598
|| || ||| | ||| ||| || || || || | ||||| | | | |
Sbjct 1060540 GACATGAAGCATTGGCCTTTCCGTGTGGTGAA---TGAGGGAGGCAAGCCCAAGGTGCAG 1060484
Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTT 195657
|| || | | || |||| ||| | || |||| || || || || |||||| |
Sbjct 1060483 GTGGAGTACAAGGGGGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTGCT 1060425
Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTT-TCATGGGTAAAACTGTGAAAGATGCAGTTG 195716
| ||||||||||||| ||| || | | || |||| || ||| | |||| ||
Sbjct 1060424 CACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGTGCAAG-GTGCAGAATGCTGTCA 1060366
Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776
| || || || || ||||||| ||| || || || ||||| || |||||||| | | |
Sbjct 1060365 TCACGGTGCCGGCATACTTCAATGACTCCCAGCGCCAGGCCACCAAGGACGCCGGCACCA 1060306
Query 195777 TTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835
| | || || || ||| | | || |||||||| || || || || || || ||||||
Sbjct 1060305 TCACAGGACTCAA-TGTGATGCGTATCATCAATGAGCCCACTGCAGCCGCTATCGCTTAT 1060247
Query 195836 GGTCTGGACAAGAAC--AA----GGACGAAGATAAAAATGTATTGATCTTTGATCTCGGT 195889
|| ||||||||||| || || | ||| || || || | |||||||| || ||
Sbjct 1060246 GGCCTGGACAAGAAGGGAACCCGGGCTGGAGAGAAGAACGTGCTCATCTTTGACCTGGGA 1060187
Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCT 195949
|| || || || |||||||| | || | || || | ||| || || || |||||| |
Sbjct 1060186 GGGGGCACTTTCGATGTCTCCATCCTTACCATCGAGGATGGGATTTTTGAGGTAAAGTCC 1060127
Query 195950 ACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTT 196008
|||||||| ||||| ||| | ||||| || || || || || | | || |||
Sbjct 1060126 ACTGCTGGCGATACCCATTTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCACTTT 1060067
Query 196009 GTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCG 196068
|| || || ||| || ||| | ||| || ||| |||| || | || | |
Sbjct 1060066 GTG-GAAGAATTCAAGCGCAAGCACAAGCGTGACATTGCTGGTAACAAGCGAGCCGTGAG 1060008
Query 196069 TCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAAT 196128
||||| | || || ||||| | || || || || ||| || | | || | |
Sbjct 1060007 GCGGCTGCGCACAGCTTGTGAGAGGGCAAAGCGCACCCTCAGCTCCTCCACACAGGCCAG 1059948
Query 196129 GGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACG 196188
|||||||||| || ||||||| || ||||||||||| || | ||||| ||||| ||
Sbjct 1059947 CATTGAGATTGACTCTCTGTTTGAGGGCATTGACTTCTACACCTCCATTACTCGTGCCCG 1059888
Query 196189 TTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACT 196248
|||||| ||| | || |||| | || | |||| || || || | | ||
Sbjct 1059887 TTTTGAGGAGCTCAATGCTGACCTTTTCCGTGGCACCCTGGAGCCGGTGGAGAAGGCTCT 1059828
Query 196249 TCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAAC 196308
||||| || ||| | || ||| || | | || ||||| || ||||| || || ||
Sbjct 1059827 GCGTGATGCCAAGCTCGACAAGGGCCAGATCCAGGAGATTGTGCTGGTGGGTGGCTCTAC 1059768
Query 196309 CCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAA 196368
||| ||||| ||||| || || |||| ||||||||| ||||| | |||||
Sbjct 1059767 CCGGATTCCCAAGATCCAGAAGCTGCTGCAGGATTTCTTCAATGGCAAAGAGCTCAACAA 1059708
Query 196369 AACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTC 196428
| |||||||| ||||| || || ||||||||||| || || || || ||||| |||
Sbjct 1059707 GAGCATCAACCCTGATGAGGCTGTGGCTTATGGTGCTGCTGTACAAGCAGCTAT--CCTC 1059650
Query 196429 AGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATC 196485
| | | ||||| | | ||||| || ||||| ||||| | ||||| | || | ||
Sbjct 1059649 ATG-GGAGACAAGTCTGAGAACGTGCAGGATCTCCTGCTGTTGGATGTAACTCCTCTGTC 1059591
Query 196486 CCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTAT 196545
|||||| | || ||||| || || || |||||| | || | | ||||| || ||
Sbjct 1059590 CCTGGGCATCGAGACAGCTGGAGGAGTGATGACTGCTCTCATCAAGCGCAACACCACCAT 1059531
Query 196546 TCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTCATA 196604
|| || || | || ||| | || || || || || || | || |||| |
Sbjct 1059530 CCCCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAACA-GTGTCCTGG 1059472
Query 196605 TTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTT 196661
| || || || |||| |||| ||| || ||| ||||||| | | || || | |
Sbjct 1059471 TCCAGGTGTACGAAGGTGAGAGGGCT---ATGACAAGGGATAACAACTTGCTGGGCAAGT 1059415
Query 196662 TCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCG 196721
| || | || || || || | |||||||| || || || ||||| | || || |
Sbjct 1059414 TTGACCTAACAGGCATCCCCCCAGCACCCAGGGGAGTCCCCCAGATCGAGGTCACTTTTG 1059355
Query 196722 ATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTG 196781
| ||||| || ||||| || || ||||||| || | ||||||| | |||||
Sbjct 1059354 ACATAGATGCCAATGGTATCCTGAACGTCAGTGCCGTGGACAAGAGCACGGGCAAGGAGA 1059295
Query 196782 AAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGG 196841
| ||||| || |||||||||||||| || || ||||| || ||||| |||||||
Sbjct 1059294 ACAAGATCACCATCACCAATGACAAGGGTCGCCTCAGCAAGGACGACATTGACCGTATGG 1059235
Query 196842 TTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875
| ||||| || || ||||||| | ||| || ||
Sbjct 1059234 TGCAAGAAGCAGAGAAGTACAAAGCAGAGGATGA 1059201
>seq1378
Length=1476964
Score = 131 bits (144), Expect = 2e-25
Identities = 122/155 (79%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| ||||| || || |||||||| ||||||||| |
Sbjct 1379759 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1379700
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || ||||||||||||| || || ||||||||||| || || || |||
Sbjct 1379699 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 1379640
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGA 172016
|| | || || |||||||| || ||||| |||||
Sbjct 1379639 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 1379605
>seq281
Length=2586918
Score = 125 bits (138), Expect = 9e-24
Identities = 128/167 (77%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||||||||| ||||| ||||| || || |||||||| ||||| ||| |
Sbjct 2064772 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 2064713
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| || || || | || |||||||| || || |||||||| || || || || |||
Sbjct 2064712 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCTGACCAG 2064653
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCT 172028
|| | || || |||||||| || ||||| || ||||| || |||||
Sbjct 2064652 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCT 2064606
Score = 116 bits (128), Expect = 5e-21
Identities = 117/152 (77%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| || || || | || |||||||| || || |||||||| || || || || |||
Sbjct 2063649 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAG 2063590
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| | || ||||||||||| || ||||| |||||||| || |||||| |||| ||||||
Sbjct 2063589 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAAC 2063530
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073
| || ||||| || || || ||||| || ||
Sbjct 2063529 ATCCAGAAGGAATCCACCCTGCACCTGGTGCT 2063498
>seq2319
Length=695921
Score = 104 bits (114), Expect = 3e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767
||||||| |||||||| || || || |||| || || || || ||||| || || || |
Sbjct 512776 ATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCCACGAAAGATG 512717
Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827
||| ||||||| || || ||| || |||| ||||| || || ||||| ||||| |
Sbjct 512716 CTGGAACTATTGCAGGGCTGAACGTCCTGCGAATCATCAACGAGCCCACAGCAGCTGCCA 512657
Query 195828 TTGCTTATGGTCTGGACAAGAA 195849
|||| ||||| |||||||||||
Sbjct 512656 TTGCCTATGGGCTGGACAAGAA 512635
>seq2926
Length=3227616
Score = 98.7 bits (108), Expect = 1e-15
Identities = 159/230 (69%), Gaps = 8/230 (3%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|| |||||||| |||| ||||| | || ||||| ||||||||||||| ||| | ||
Sbjct 142553 ATACAAATCTTCATGAAGACCCTCATGGGGAAAACCATCACCCTCGAGGCTGAACCTTCT 142612
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| | | || || | |||| || ||| |||| ||||| || | |||||
Sbjct 142613 GATTCTACAGAAAATGT--------AGATCCAGGATGAGGAGGGCATCCCTCGGAATCAG 142664
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || || |||||||| || ||||| || |||||| | || | | | ||||||
Sbjct 142665 CAGCGGCTGATCTTTGCTGGGAAGCAGCTGGAGGATGGATGCACATTGTCCAACTACAAC 142724
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091
|| || | || || || || ||||| | || || |||| ||||||||
Sbjct 142725 ATTAAACAAGAATCCACCCTTCACCTGGGGCTGAGACTTCATGGTGGTGC 142774
>seq2411
Length=466381
Score = 98.7 bits (108), Expect = 1e-15
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| ||||| ||||| || || ||||| |||||||||||||| ||| |
Sbjct 42837 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAAACCATCACCCTCGAGGTGGAGCCCAAT 42778
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965
||||| ||||| ||| | ||||||||||| || || ||||||||
Sbjct 42777 GACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGG 42734
>seq2371
Length=4823497
Score = 87.8 bits (96), Expect = 2e-12
Identities = 124/174 (71%), Gaps = 3/174 (2%)
Strand=Plus/Minus
Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873
|||||| ||||| ||||||||||| ||||||||| | || | ||| || || | |
Sbjct 4015096 AACAGCTGCTGCCATTGCTTATGGACTGGACAAG---AGAGAGGGAGAGAAGAACATCCT 4015040
Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933
| || || || || ||||| || |||||||| || || |||| ||||| || |
Sbjct 4015039 TGTATTCGACCTGGGCGGTGGAACTTTTGATGTGTCCCTCCTCACAATTGACAACGGAGT 4014980
Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
|| ||||| ||||||| ||| || ||||| || ||||| ||||| || ||
Sbjct 4014979 CTTTGAAGTGGTGGCTACTAATGGGGACACTCACCTGGGTGGAGAAGACTTTGA 4014926
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657837615034080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |