Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq334 104 4e-17 >seq334 Length=7684865 Score = 104 bits (114), Expect = 4e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 39167 TTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGC 39226 ||||||| |||||| | ||| |||||||||||||| ||||| |||||||| |||||||| Sbjct 6125992 TTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTTTCAGCCAAAAAATTGATGC 6126051 Query 39227 AAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTA 39273 |||| | ||||||||| || || |||||| ||||| |||| || Sbjct 6126052 AAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGCTACTA 6126098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905101899001200