Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq2534 87.8 5e-12
>seq2534
Length=279983
Score = 87.8 bits (96), Expect = 5e-12
Identities = 141/200 (71%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679
||||| || || || || || || || | || || ||||| || |||||||| | |||
Sbjct 61551 GTTTTGACGGCCGTGTCGATGAGGCCCTCGCGGCCGCCCATGGCGTGGAAGAAGAACTCG 61610
Query 302680 TCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATC 302738
|| ||| || || | | ||||| |||| ||||| || || |||||| |
Sbjct 61611 GTGGG-CGTGAGGCCGGCCAGGTAGGAGTTCTCCACGAAGCCGCGGCTCTCGGGGCCGTA 61669
Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798
|||| |||| | ||||| ||||| |||| || || ||||| | ||||| ||||| ||
Sbjct 61670 GTCGTCCTTGATGAAGTGCGGCAGCGTCCGGTGCTTGAAGCCGAACGGGATCCGCTTCCC 61729
Query 302799 ATCAACGTTCTGCTGTCCCA 302818
|| ||||||||||| ||||
Sbjct 61730 CTCCACGTTCTGCTGGCCCA 61749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471760763003718
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |