Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2534 87.8 5e-12 >seq2534 Length=279983 Score = 87.8 bits (96), Expect = 5e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 ||||| || || || || || || || | || || ||||| || |||||||| | ||| Sbjct 61551 GTTTTGACGGCCGTGTCGATGAGGCCCTCGCGGCCGCCCATGGCGTGGAAGAAGAACTCG 61610 Query 302680 TCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATC 302738 || ||| || || | | ||||| |||| ||||| || || |||||| | Sbjct 61611 GTGGG-CGTGAGGCCGGCCAGGTAGGAGTTCTCCACGAAGCCGCGGCTCTCGGGGCCGTA 61669 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 |||| |||| | ||||| ||||| |||| || || ||||| | ||||| ||||| || Sbjct 61670 GTCGTCCTTGATGAAGTGCGGCAGCGTCCGGTGCTTGAAGCCGAACGGGATCCGCTTCCC 61729 Query 302799 ATCAACGTTCTGCTGTCCCA 302818 || ||||||||||| |||| Sbjct 61730 CTCCACGTTCTGCTGGCCCA 61749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471760763003718