Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq2781 179 5e-39
seq2315 170 2e-36
seq2246 125 9e-23
seq270 116 5e-20
seq334 102 1e-15
seq2534 100 3e-15
>seq2781
Length=3610385
Score = 179 bits (198), Expect = 5e-39
Identities = 161/202 (80%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||||||||||||||| |||| | ||
Sbjct 1364817 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGCGAGGTGA 1364758
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 1364757 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 1364698
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 1364697 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1364638
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 1364637 GCACCTGCTTCAGCACCTTGTA 1364616
Score = 176 bits (194), Expect = 6e-38
Identities = 160/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| | ||
Sbjct 1276200 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1276259
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 1276260 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 1276319
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 1276320 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1276379
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 1276380 GCACCTGCTTCAGCACCTTGTA 1276401
Score = 176 bits (194), Expect = 6e-38
Identities = 160/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| | ||
Sbjct 1280402 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1280343
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 1280342 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 1280283
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 1280282 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1280223
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 1280222 GCACCTGCTTCAGCACCTTGTA 1280201
Score = 176 bits (194), Expect = 6e-38
Identities = 160/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| | ||
Sbjct 1311655 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1311596
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 1311595 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 1311536
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 1311535 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1311476
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 1311475 GCACCTGCTTCAGCACCTTGTA 1311454
Score = 176 bits (194), Expect = 6e-38
Identities = 160/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| | ||
Sbjct 1393447 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1393506
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 1393507 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 1393566
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 1393567 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1393626
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 1393627 GCACCTGCTTCAGCACCTTGTA 1393648
Score = 170 bits (188), Expect = 2e-36
Identities = 159/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| | ||
Sbjct 1288335 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1288394
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 1288395 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 1288454
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 1288455 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1288514
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| | |||||||||
Sbjct 1288515 GCACCTGCTTCAACACCTTGTA 1288536
>seq2315
Length=5077893
Score = 170 bits (188), Expect = 2e-36
Identities = 159/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| |||||||||| |||| | ||
Sbjct 4178761 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCATCTGGATCTCCCGCGAGGTGA 4178820
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 4178821 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 4178880
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 4178881 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 4178940
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 4178941 GCACCTGCTTCAGCACCTTGTA 4178962
>seq2246
Length=973789
Score = 125 bits (138), Expect = 9e-23
Identities = 129/169 (76%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226
||||||||||||||||||||| || | | || |||||||||||||||||| | ||
Sbjct 490317 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 490376
Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286
|||| || |||||||| |||||||||||| | ||| |||||| |||| | | ||| |
Sbjct 490377 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATG 490436
Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335
||||| |||||| ||| | || ||| || | ||| |||||||||
Sbjct 490437 ATGGCATACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACGCGGCCCT 490485
Score = 105 bits (116), Expect = 8e-17
Identities = 85/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234
|||| | ||||||||| ||||| |||||||||||||| || ||||| || || |||||||
Sbjct 492694 CGGCGAGGCCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 492753
Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277
||||||||||||| |||| |||||||| || || |||||
Sbjct 492754 AGATGCCCTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 492796
Score = 98.7 bits (108), Expect = 1e-14
Identities = 112/149 (75%), Gaps = 1/149 (1%)
Strand=Plus/Plus
Query 1627787 CGTGGTAGACCGTCTCAAAGATGGCCCGGTTGAGGCGCCGCGCGCCGGCGCTCTCCCACG 1627846
||| ||||| ||||| |||||| | ||||||||||| |||| |||||||||| | |
Sbjct 487063 CGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGCGCCTCGGCGCTCTCAAAGG 487122
Query 1627847 GCAGGTCCATCATGGCAAACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGT 1627906
| | ||| | | || ||||||| |||||||||||||||| ||| || |||||||
Sbjct 487123 GGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGGCCGGT 487182
Query 1627907 GGCGCAGGTTCGAGTGGCGGGCCT-CGGG 1627934
| ||| |||| ||| | ||||| ||||
Sbjct 487183 GCCGCCGGTTGGAGCGCTCGGCCTGCGGG 487211
Score = 87.8 bits (96), Expect = 2e-11
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 1627348 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCG 1627407
|| || ||||||||||| | ||| |||||||||||| ||||| | |||| | ||||
Sbjct 485035 AACTCCCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCG 485094
Query 1627408 GTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAG 1627460
|||||||||||||||| | || | |||||| |||||| | | | ||||||
Sbjct 485095 TTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTTGGCATGGGGGAGATGAGGAG 485147
>seq270
Length=2584093
Score = 116 bits (128), Expect = 5e-20
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || || | | | |||||||||||| ||||| ||||| || | ||
Sbjct 2152423 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACGGCCGTCTGAATCTCCCGGGACGTGA 2152364
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| | || ||||| ||| ||| || | ||||| || | |
Sbjct 2152363 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCAATGCGCTCAAAGA 2152304
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||| ||||| || |||||||||| ||| | |||| ||||||||| ||| || |
Sbjct 2152303 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCAGGAT 2152244
Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546
| |||||||| |||||||||||||
Sbjct 2152243 GGACCTGCTTCAGCACCTTGTAGA 2152220
>seq334
Length=7684865
Score = 102 bits (112), Expect = 1e-15
Identities = 91/114 (80%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889
||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | ||
Sbjct 6128461 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 6128520
Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943
||| |||| ||||||| ||| |||||| |||||| || |||| ||| || ||
Sbjct 6128521 GTACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 6128574
>seq2534
Length=279983
Score = 100 bits (110), Expect = 3e-15
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095
||||||||||||||||| ||| ||||| ||| | |||||||| | |||| |
Sbjct 61663 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGCCTCACGCCCACCGAGTTC 61604
Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155
|| | ||| || ||||| |||||||||||| |||||||||||||||| |||||||||
Sbjct 61603 TTCTTCCACGCCATGGGCGGCCGCGAGGGCCTCATCGACACGGCCGTCAAAACGGCCGAG 61544
Query 509156 ACGGG 509160
|| ||
Sbjct 61543 ACCGG 61539
Score = 93.3 bits (102), Expect = 5e-13
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109
|||||||||||| ||||| ||||||||||| |||| ||| | |||||| ||||||
Sbjct 51967 CGTCATCTCCTTCGACGGTTCCTACGTCAACTACCGGCACCTGGCGCTGCTGTGCGACAC 51908
Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCA 512169
|||| || |||||| || ||||| |||| || |||||| |||||||| |||
Sbjct 51907 CATGACCTCGCGCGGACACCTGATGGCCATCACCCGGCACGGCGTCAACCGCCAGGACAC 51848
Query 512170 CGGCTTCCTGTCGCGGGCCTCTTTCGAAGAGACCGT 512205
||| |||| | | ||| ||||| ||||| ||
Sbjct 51847 CGGGCCCCTGATGAAGTGCTCCTTCGAGGAGACGGT 51812
Score = 86.0 bits (94), Expect = 8e-11
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Minus
Query 507735 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTC 507786
||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 67069 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACCTGCCGCAGTC 67018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106891857045438
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