Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq2781 224 2e-52
seq2315 215 8e-50
seq270 174 2e-37
seq2246 109 9e-18
seq334 109 9e-18
seq2534 95.1 2e-13
>seq2781
Length=3610385
Score = 224 bits (248), Expect = 2e-52
Identities = 196/244 (80%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| |||
Sbjct 1364856 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1364797
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||||||||||||||| || | | ||| ||| ||||||||| |
Sbjct 1364796 GCAGCAGGCGCACGGCGGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1364737
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| ||||||| |||| ||||||||||| || |||||||
Sbjct 1364736 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1364677
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 1364676 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1364617
Query 1485710 AAAC 1485713
| ||
Sbjct 1364616 ACAC 1364613
Score = 219 bits (242), Expect = 7e-51
Identities = 195/244 (80%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| |||
Sbjct 1280441 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1280382
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| || | | ||| ||| ||||||||| |
Sbjct 1280381 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1280322
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| ||||||| |||| ||||||||||| || |||||||
Sbjct 1280321 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1280262
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 1280261 TGATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1280202
Query 1485710 AAAC 1485713
| ||
Sbjct 1280201 ACAC 1280198
Score = 219 bits (242), Expect = 7e-51
Identities = 195/244 (80%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| |||
Sbjct 1311694 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1311635
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| || | | ||| ||| ||||||||| |
Sbjct 1311634 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1311575
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| ||||||| |||| ||||||||||| || |||||||
Sbjct 1311574 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1311515
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 1311514 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1311455
Query 1485710 AAAC 1485713
| ||
Sbjct 1311454 ACAC 1311451
Score = 219 bits (242), Expect = 7e-51
Identities = 195/244 (80%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| |||
Sbjct 1393408 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1393467
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| || | | ||| ||| ||||||||| |
Sbjct 1393468 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1393527
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| ||||||| |||| ||||||||||| || |||||||
Sbjct 1393528 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1393587
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 1393588 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1393647
Query 1485710 AAAC 1485713
| ||
Sbjct 1393648 ATAC 1393651
Score = 215 bits (238), Expect = 8e-50
Identities = 194/244 (80%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| || ||||| ||| ||||||| |||||| |||
Sbjct 1276161 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCATGCTTGGCCAGCTCGCCGGGCA 1276220
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| || | | ||| ||| ||||||||| |
Sbjct 1276221 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1276280
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| ||||||| |||| ||||||||||| || |||||||
Sbjct 1276281 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1276340
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 1276341 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1276400
Query 1485710 AAAC 1485713
| ||
Sbjct 1276401 ACAC 1276404
Score = 215 bits (238), Expect = 8e-50
Identities = 194/244 (80%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| |||
Sbjct 1288296 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1288355
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| || | | ||| ||| ||||||||| |
Sbjct 1288356 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1288415
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| ||||||| |||| ||||||||||| || |||||||
Sbjct 1288416 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1288475
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| | ||||||||
Sbjct 1288476 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAACACCTTGT 1288535
Query 1485710 AAAC 1485713
| ||
Sbjct 1288536 ACAC 1288539
Score = 98.7 bits (108), Expect = 2e-14
Identities = 71/82 (87%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| |||
Sbjct 1373347 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1373288
Query 1485530 TGATCAGGCGCACGGCGGTCTG 1485551
| |||||||||||| |||||
Sbjct 1373287 GCAGCAGGCGCACGGCCGTCTG 1373266
>seq2315
Length=5077893
Score = 215 bits (238), Expect = 8e-50
Identities = 194/244 (80%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| |||
Sbjct 4178722 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 4178781
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| |||||||||| || | | ||| ||| ||||||||| |
Sbjct 4178782 GCAGCAGGCGCACGGCCATCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 4178841
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| ||||||| |||| ||||||||||| || |||||||
Sbjct 4178842 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 4178901
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 4178902 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 4178961
Query 1485710 AAAC 1485713
| ||
Sbjct 4178962 ACAC 4178965
>seq270
Length=2584093
Score = 174 bits (192), Expect = 2e-37
Identities = 192/256 (75%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||||||||| |||||| ||||||| || || | |
Sbjct 2152462 TGTACTTGGTGACAGCCTTGGTGCCCTCTGAGACCGCGTGCTTGGCCAGCTCTCCTGGGA 2152403
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||| ||||| |||| ||| ||| |||||||||
Sbjct 2152402 GCAGCAGGCGCACGGCCGTCTGAATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAAT 2152343
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| ||||||||| ||| || | ||||| || | ||||| ||||| || |||||||
Sbjct 2152342 GGGCCAGGCGGGAGGCTTCTCCAGCAATGCGCTCAAAGATGTCATTGACGAAGGAGTTCA 2152283
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| ||| || || |||||||| ||||||||||
Sbjct 2152282 TGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCAGGATGGACCTGCTTCAGCACCTTGT 2152223
Query 1485710 AAACAAAGGACGAGTA 1485725
| ||| || |||||
Sbjct 2152222 AGACATAGATGGAGTA 2152207
>seq2246
Length=973789
Score = 109 bits (120), Expect = 9e-18
Identities = 119/154 (77%), Gaps = 3/154 (2%)
Strand=Plus/Plus
Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGC-GGTTGAGGCGACGCGCGCCGGCGCTCTC 2070110
||| | | |||||| ||||| |||||| ||| |||||||||| |||| ||||||||||
Sbjct 487059 GCCCCGTAGTAGATGGTCTCGAAGATG-TGCTGGTTGAGGCGCTGCGCCTCGGCGCTCTC 487117
Query 2070111 CCACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGG 2070170
| || | ||| | | || ||||||||||||||||||||||||| ||| || ||
Sbjct 487118 AAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGG 487177
Query 2070171 CCGGTGGCGCAGGTTCGAGTGCCGGGCCT-CGGG 2070203
|||||| ||| |||| ||| || ||||| ||||
Sbjct 487178 CCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGGG 487211
Score = 105 bits (116), Expect = 1e-16
Identities = 102/131 (78%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638
|||| |||||||||||||||| || | ||||||||||||||||||||||||| ||
Sbjct 490317 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 490376
Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698
|||| || |||||||| ||||||||||| | || |||||| |||| | | || |
Sbjct 490377 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATG 490436
Query 2071699 ATGGCCGACCA 2071709
||||| ||||
Sbjct 490437 ATGGCATACCA 490447
Score = 100 bits (110), Expect = 5e-15
Identities = 84/103 (82%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 2073650 CGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGT 2073709
|||| | ||||||||| ||||| | |||||||||||| || |||| ||||| || ||||
Sbjct 492694 CGGCGAGGCCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 492753
Query 2073710 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752
||||||||||||| |||| |||||||| || ||| |||||
Sbjct 492754 AGATGCCCTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 492796
>seq334
Length=7684865
Score = 109 bits (120), Expect = 9e-18
Identities = 92/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362
|||||||| || ||||| ||||||||||||||||| |||||||||| ||| || |||
Sbjct 6128462 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 6128521
Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415
|| |||||||||| | || ||||| ||||||||| || |||||||||||
Sbjct 6128522 TACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 6128574
>seq2534
Length=279983
Score = 95.1 bits (104), Expect = 2e-13
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 431022 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 431081
||||||||||||||||| ||| ||||| ||| | |||||||| | |||| |
Sbjct 61663 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGCCTCACGCCCACCGAGTTC 61604
Query 431082 TTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAG 431141
|| | ||| || ||||| |||||||| ||| |||||||||||||||| |||||||||
Sbjct 61603 TTCTTCCACGCCATGGGCGGCCGCGAGGGCCTCATCGACACGGCCGTCAAAACGGCCGAG 61544
Query 431142 ACGGG 431146
|| ||
Sbjct 61543 ACCGG 61539
Score = 87.8 bits (96), Expect = 3e-11
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Minus
Query 429664 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCG 429716
||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 67069 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACCTGCCGCAGTCG 67017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915925787073146
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