Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2781 224 2e-52 seq2315 215 8e-50 seq270 174 2e-37 seq2246 109 9e-18 seq334 109 9e-18 seq2534 95.1 2e-13 >seq2781 Length=3610385 Score = 224 bits (248), Expect = 2e-52 Identities = 196/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 1364856 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1364797 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| || | | ||| ||| ||||||||| | Sbjct 1364796 GCAGCAGGCGCACGGCGGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1364737 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 1364736 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1364677 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 1364676 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1364617 Query 1485710 AAAC 1485713 | || Sbjct 1364616 ACAC 1364613 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 1280441 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1280382 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 1280381 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1280322 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 1280321 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1280262 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 1280261 TGATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1280202 Query 1485710 AAAC 1485713 | || Sbjct 1280201 ACAC 1280198 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 1311694 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1311635 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 1311634 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1311575 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 1311574 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1311515 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 1311514 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1311455 Query 1485710 AAAC 1485713 | || Sbjct 1311454 ACAC 1311451 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 1393408 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1393467 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 1393468 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1393527 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 1393528 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1393587 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 1393588 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1393647 Query 1485710 AAAC 1485713 | || Sbjct 1393648 ATAC 1393651 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||| ||| ||||||| |||||| ||| Sbjct 1276161 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCATGCTTGGCCAGCTCGCCGGGCA 1276220 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 1276221 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1276280 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 1276281 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1276340 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 1276341 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 1276400 Query 1485710 AAAC 1485713 | || Sbjct 1276401 ACAC 1276404 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 1288296 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1288355 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 1288356 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 1288415 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 1288416 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 1288475 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| | |||||||| Sbjct 1288476 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAACACCTTGT 1288535 Query 1485710 AAAC 1485713 | || Sbjct 1288536 ACAC 1288539 Score = 98.7 bits (108), Expect = 2e-14 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 1373347 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1373288 Query 1485530 TGATCAGGCGCACGGCGGTCTG 1485551 | |||||||||||| ||||| Sbjct 1373287 GCAGCAGGCGCACGGCCGTCTG 1373266 >seq2315 Length=5077893 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 4178722 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 4178781 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| |||||||||| || | | ||| ||| ||||||||| | Sbjct 4178782 GCAGCAGGCGCACGGCCATCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 4178841 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 4178842 GCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 4178901 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 4178902 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 4178961 Query 1485710 AAAC 1485713 | || Sbjct 4178962 ACAC 4178965 >seq270 Length=2584093 Score = 174 bits (192), Expect = 2e-37 Identities = 192/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||||||||| |||||| ||||||| || || | | Sbjct 2152462 TGTACTTGGTGACAGCCTTGGTGCCCTCTGAGACCGCGTGCTTGGCCAGCTCTCCTGGGA 2152403 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| ||||| |||| ||| ||| ||||||||| Sbjct 2152402 GCAGCAGGCGCACGGCCGTCTGAATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAAT 2152343 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || | ||||| || | ||||| ||||| || ||||||| Sbjct 2152342 GGGCCAGGCGGGAGGCTTCTCCAGCAATGCGCTCAAAGATGTCATTGACGAAGGAGTTCA 2152283 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| || || |||||||| |||||||||| Sbjct 2152282 TGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCAGGATGGACCTGCTTCAGCACCTTGT 2152223 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 2152222 AGACATAGATGGAGTA 2152207 >seq2246 Length=973789 Score = 109 bits (120), Expect = 9e-18 Identities = 119/154 (77%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGC-GGTTGAGGCGACGCGCGCCGGCGCTCTC 2070110 ||| | | |||||| ||||| |||||| ||| |||||||||| |||| |||||||||| Sbjct 487059 GCCCCGTAGTAGATGGTCTCGAAGATG-TGCTGGTTGAGGCGCTGCGCCTCGGCGCTCTC 487117 Query 2070111 CCACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGG 2070170 | || | ||| | | || ||||||||||||||||||||||||| ||| || || Sbjct 487118 AAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGG 487177 Query 2070171 CCGGTGGCGCAGGTTCGAGTGCCGGGCCT-CGGG 2070203 |||||| ||| |||| ||| || ||||| |||| Sbjct 487178 CCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGGG 487211 Score = 105 bits (116), Expect = 1e-16 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| |||||||||||||||| || | ||||||||||||||||||||||||| || Sbjct 490317 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 490376 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| || |||||||| ||||||||||| | || |||||| |||| | | || | Sbjct 490377 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATG 490436 Query 2071699 ATGGCCGACCA 2071709 ||||| |||| Sbjct 490437 ATGGCATACCA 490447 Score = 100 bits (110), Expect = 5e-15 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2073650 CGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGT 2073709 |||| | ||||||||| ||||| | |||||||||||| || |||| ||||| || |||| Sbjct 492694 CGGCGAGGCCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 492753 Query 2073710 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 ||||||||||||| |||| |||||||| || ||| ||||| Sbjct 492754 AGATGCCCTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 492796 >seq334 Length=7684865 Score = 109 bits (120), Expect = 9e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||||||||||||||| |||||||||| ||| || ||| Sbjct 6128462 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 6128521 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || ||||| ||||||||| || ||||||||||| Sbjct 6128522 TACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 6128574 >seq2534 Length=279983 Score = 95.1 bits (104), Expect = 2e-13 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 431022 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 431081 ||||||||||||||||| ||| ||||| ||| | |||||||| | |||| | Sbjct 61663 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGCCTCACGCCCACCGAGTTC 61604 Query 431082 TTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAG 431141 || | ||| || ||||| |||||||| ||| |||||||||||||||| ||||||||| Sbjct 61603 TTCTTCCACGCCATGGGCGGCCGCGAGGGCCTCATCGACACGGCCGTCAAAACGGCCGAG 61544 Query 431142 ACGGG 431146 || || Sbjct 61543 ACCGG 61539 Score = 87.8 bits (96), Expect = 3e-11 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 429664 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCG 429716 ||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 67069 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACCTGCCGCAGTCG 67017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915925787073146