Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq2317 138 2e-27
>seq2317
Length=688720
Score = 138 bits (152), Expect = 2e-27
Identities = 127/161 (79%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438
|| ||||||||||| ||| | |||||||| || ||||| || |||||||| || |||||
Sbjct 295830 GCTTTATGGTGGTATTATGTCTCTAAAGGAATCGAATATTTGGATACAGTATTCTTCATT 295771
Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498
|| |||||||| |||||||| |||| || || || || ||||| ||||| || |||||
Sbjct 295770 CTGAGGAAAAAATTTAATCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 295711
Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539
|| || | ||| | |||||||| ||| ||||||| || ||
Sbjct 295710 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 295670
Score = 86.0 bits (94), Expect = 1e-11
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728
||| || || ||| | |||| || || || || ||||| ||||| || ||||| || ||
Sbjct 292926 GGTGCAGTTTCATGTGACTATTGGCCACACAGCCATGTCTATTTATATTGATTGTCCTTT 292867
Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788
|| ||||||| ||| ||| || || ||||| || | || || || || |||||||
Sbjct 292866 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGG 292807
Query 58789 TAACTTCTATTTTAGAACATACAAG 58813
||||||||| | | | ||||| |||
Sbjct 292806 TAACTTCTACTATCGGACATATAAG 292782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903377163983040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |