Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq281 123 2e-23
seq1378 122 8e-23
seq2246 91.5 1e-13
>seq281
Length=2586918
Score = 123 bits (136), Expect = 2e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
|||||| || ||||| || ||||| || | ||| | ||||| |||||||||||
Sbjct 2063284 GGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCC 2063343
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || |||| ||||||||| || || || || ||||| || |||||| |||
Sbjct 2063344 AGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTT 2063403
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| ||||| |||||||||| || | ||||| ||| ||||| ||||| ||
Sbjct 2063404 GACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 2063463
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||||||||||||
Sbjct 2063464 CTTCACGAAAATCTGCAT 2063481
Score = 123 bits (136), Expect = 2e-23
Identities = 121/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||| ||||||||||| || | || |||| ||||||||| |||||||| |||||||||
Sbjct 2064618 TCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTG 2064677
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||| | | |||| ||||| |||||||||| || | ||||| |
Sbjct 2064678 TCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATG 2064737
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661
|| ||||| ||||| || || || || |||||||||
Sbjct 2064738 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2064773
Score = 89.7 bits (98), Expect = 5e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
|||||| || ||||| || ||||| || | ||| | || || |||||||||||
Sbjct 2063512 GGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCC 2063571
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| |||| |||| ||||||||| |||||||| ||||||||||| |||||| |||
Sbjct 2063572 AGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTT 2063631
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTC 133609
| | ||||| ||||| |||||||
Sbjct 2063632 CACATTCTCAATGGTGTCACTGGGCTC 2063658
>seq1378
Length=1476964
Score = 122 bits (134), Expect = 8e-23
Identities = 120/155 (77%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| || ||||||||||| || | || |||| ||||||||| ||||||||||||||||||
Sbjct 1379605 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1379664
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| |||| | ||| | ||||| ||||||| || || | ||||| |
Sbjct 1379665 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 1379724
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| ||||| || || ||||| ||||||||
Sbjct 1379725 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 1379759
>seq2246
Length=973789
Score = 91.5 bits (100), Expect = 1e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGC 148558
||||| ||| | | ||| || || ||| || ||||| |||||||| ||||| || ||
Sbjct 487001 GCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCGGGCCAGCTCGCAGCTGGCCTCCAGGGC 487060
Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTA 148618
|||||||| || |||||| || ||| |||||| || |||| |||| || |
Sbjct 487061 CCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGCGCCTCGGCGCTCTCAAA 487120
Query 148619 CGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCG 148678
|| | | || | | || |||||||| |||||||| ||||| | ||| ||||||||
Sbjct 487121 GGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGGCCG 487180
Query 148679 GTG 148681
|||
Sbjct 487181 GTG 487183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483402587121360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |