Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq2892 100 3e-16
>seq2892
Length=3222183
Score = 100 bits (110), Expect = 3e-16
Identities = 245/367 (67%), Gaps = 6/367 (2%)
Strand=Plus/Minus
Query 162629 CCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGAT 162688
||| |||| || || ||||| |||||||| | ||| ||||||||||||||| |
Sbjct 383200 CCTGCAGCACCCGGACTATCTCGGCGTTGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGT 383141
Query 162689 TAATAACATATTTCCACTTAACGCTGAGTCCGTAC-AGATCCTGTAGACAGTTCAGATCG 162747
| || | || ||| ||| | || | | || ||||| | ||||| || |||
Sbjct 383140 TGATCAGGTAGCGCCATGGCACGGGGC-TCTGCAGGAGGTCCTGCATGCAGTTGAGGTCG 383082
Query 162748 GCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACA 162807
||||| | || ||| | || || || ||||| |||| | |||| || |||||
Sbjct 383081 GCCTGCAGCCGGGACCAGGTGGCATAGACCACGCTTTCCAGGCGGCTGGCCACGAAGACG 383022
Query 162808 TTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCC 162865
||| ||| || | | | || || ||||||| ||| | | || | ||| |
Sbjct 383021 TTGGGGAAGCAGGCAGCAATGGCCCGCACGGCCTTCTGGAAGGCGGCCGGG--GATTTGC 382964
Query 162866 TATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGA 162925
| ||||| || || ||||| | |||||| || |||||||||| | ||| | | ||| |
Sbjct 382963 TGTCTACATGGACACAGTAAACATTCTGGGGAGCGTAGATGGATCGCAGGAGCCGCTCAA 382904
Query 162926 ACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGC 162985
|||| || || || ||||| | | || || || || ||||||||||| |||||||
Sbjct 382903 ACATGTCGATTTTGTGGTGAATGATAATGGAGTAGGCGATGGGGAACTCCTCCTCCTCCT 382844
Query 162986 GACTGAG 162992
| |||||
Sbjct 382843 GGCTGAG 382837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578410207574400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |