Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq2892 100 3e-16 >seq2892 Length=3222183 Score = 100 bits (110), Expect = 3e-16 Identities = 245/367 (67%), Gaps = 6/367 (2%) Strand=Plus/Minus Query 162629 CCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGAT 162688 ||| |||| || || ||||| |||||||| | ||| ||||||||||||||| | Sbjct 383200 CCTGCAGCACCCGGACTATCTCGGCGTTGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGT 383141 Query 162689 TAATAACATATTTCCACTTAACGCTGAGTCCGTAC-AGATCCTGTAGACAGTTCAGATCG 162747 | || | || ||| ||| | || | | || ||||| | ||||| || ||| Sbjct 383140 TGATCAGGTAGCGCCATGGCACGGGGC-TCTGCAGGAGGTCCTGCATGCAGTTGAGGTCG 383082 Query 162748 GCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACA 162807 ||||| | || ||| | || || || ||||| |||| | |||| || ||||| Sbjct 383081 GCCTGCAGCCGGGACCAGGTGGCATAGACCACGCTTTCCAGGCGGCTGGCCACGAAGACG 383022 Query 162808 TTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCC 162865 ||| ||| || | | | || || ||||||| ||| | | || | ||| | Sbjct 383021 TTGGGGAAGCAGGCAGCAATGGCCCGCACGGCCTTCTGGAAGGCGGCCGGG--GATTTGC 382964 Query 162866 TATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGA 162925 | ||||| || || ||||| | |||||| || |||||||||| | ||| | | ||| | Sbjct 382963 TGTCTACATGGACACAGTAAACATTCTGGGGAGCGTAGATGGATCGCAGGAGCCGCTCAA 382904 Query 162926 ACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGC 162985 |||| || || || ||||| | | || || || || ||||||||||| ||||||| Sbjct 382903 ACATGTCGATTTTGTGGTGAATGATAATGGAGTAGGCGATGGGGAACTCCTCCTCCTCCT 382844 Query 162986 GACTGAG 162992 | ||||| Sbjct 382843 GGCTGAG 382837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578410207574400