Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq2255 116 1e-22
seq999 100 9e-18
seq2524 98.7 3e-17
seq1378 98.7 3e-17
>seq2255
Length=896007
Score = 116 bits (128), Expect = 1e-22
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 757607 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 757666
Query 2829 CCGGGCTTCAGC 2840
||||||||||||
Sbjct 757667 CCGGGCTTCAGC 757678
Score = 116 bits (128), Expect = 1e-22
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 762147 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 762206
Query 2829 CCGGGCTTCAGC 2840
||||||||||||
Sbjct 762207 CCGGGCTTCAGC 762218
Score = 116 bits (128), Expect = 1e-22
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 775582 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 775523
Query 2829 CCGGGCTTCAGC 2840
||||||||||||
Sbjct 775522 CCGGGCTTCAGC 775511
>seq999
Length=6947771
Score = 100 bits (110), Expect = 9e-18
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 5725555 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 5725614
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 5725615 CCCGGGTTTCGGC 5725627
>seq2524
Length=232239
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 149710 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 149651
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 149650 CCGGGTTTCGGC 149639
>seq1378
Length=1476964
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1384179 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1384120
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1384119 CCGGGTTTCGGC 1384108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15849077508030
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |