Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq281 114 1e-20
seq1378 84.2 2e-11
seq2111 82.4 7e-11
>seq281
Length=2586918
Score = 114 bits (126), Expect = 1e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| || | | ||| ||| | || ||||||||||| || |||||
Sbjct 2063291 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAG 2063350
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|||| || ||||||||| | |||| | |||||| ||| |||||| ||| | | ||
Sbjct 2063351 ATCAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTT 2063410
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | ||||| || | |||||||| | ||||| || || || |||| || |||||
Sbjct 2063411 TCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 2063470
Query 35726 AATATCTGCAT 35736
|| ||||||||
Sbjct 2063471 AAAATCTGCAT 2063481
Score = 109 bits (120), Expect = 5e-19
Identities = 123/165 (75%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 35572 GGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAAC 35631
||| ||| | || ||||||||||| || ||||| |||| || ||||||||| | ||| |
Sbjct 2064608 GGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGAT 2064667
Query 35632 GCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTC 35691
| ||||||||| |||||| ||||| | || | | ||||| || | ||||||||
Sbjct 2064668 CCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTC 2064727
Query 35692 CACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
| ||||| || || || |||| || |||||||| ||||||||
Sbjct 2064728 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2064772
Score = 82.4 bits (90), Expect = 7e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| || | | ||| ||| | || ||||||||||| || |||||
Sbjct 2063519 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAA 2063578
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCA 35660
|||| || ||||||||| | ||| | | ||||||||| |||||| |||||
Sbjct 2063579 ATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCA 2063633
>seq1378
Length=1476964
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641
|| ||||||||||| || ||||| |||| || ||||||||| | ||| | || ||||||
Sbjct 1379605 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1379664
Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701
||| |||||| || | | | | | ||||| || | || ||||| | |||||
Sbjct 1379665 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 1379724
Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737
|| || || |||| || || || || |||||||||
Sbjct 1379725 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATT 1379760
>seq2111
Length=1036795
Score = 82.4 bits (90), Expect = 7e-11
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 35541 TACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCG 35600
||||| | |||||||||||||| || | || || || | || ||||||||||| || |
Sbjct 813737 TACTCACTTTTTGAATGTTGTAGTCAGACAGTGTGCGTCCATCCTCCAGCTGCTTCCCAG 813678
Query 35601 CAAATATCAACCGCTGCTGGTCCGAAGG 35628
|||| |||||||||||||| |||| |||
Sbjct 813677 CAAAGATCAACCGCTGCTGATCCGGAGG 813650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450776616351120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |