Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq281 114 1e-20 seq1378 84.2 2e-11 seq2111 82.4 7e-11 >seq281 Length=2586918 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| ||| | || ||||||||||| || ||||| Sbjct 2063291 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAG 2063350 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | |||| | |||||| ||| |||||| ||| | | || Sbjct 2063351 ATCAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTT 2063410 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 2063411 TCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 2063470 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 2063471 AAAATCTGCAT 2063481 Score = 109 bits (120), Expect = 5e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35572 GGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAAC 35631 ||| ||| | || ||||||||||| || ||||| |||| || ||||||||| | ||| | Sbjct 2064608 GGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGAT 2064667 Query 35632 GCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTC 35691 | ||||||||| |||||| ||||| | || | | ||||| || | |||||||| Sbjct 2064668 CCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTC 2064727 Query 35692 CACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||||| || || || |||| || |||||||| |||||||| Sbjct 2064728 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2064772 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| ||| | || ||||||||||| || ||||| Sbjct 2063519 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAA 2063578 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCA 35660 |||| || ||||||||| | ||| | | ||||||||| |||||| ||||| Sbjct 2063579 ATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCA 2063633 >seq1378 Length=1476964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||||||||| || ||||| |||| || ||||||||| | ||| | || |||||| Sbjct 1379605 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1379664 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| |||||| || | | | | | ||||| || | || ||||| | ||||| Sbjct 1379665 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 1379724 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || || || |||| || || || || ||||||||| Sbjct 1379725 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATT 1379760 >seq2111 Length=1036795 Score = 82.4 bits (90), Expect = 7e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 35541 TACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCG 35600 ||||| | |||||||||||||| || | || || || | || ||||||||||| || | Sbjct 813737 TACTCACTTTTTGAATGTTGTAGTCAGACAGTGTGCGTCCATCCTCCAGCTGCTTCCCAG 813678 Query 35601 CAAATATCAACCGCTGCTGGTCCGAAGG 35628 |||| |||||||||||||| |||| ||| Sbjct 813677 CAAAGATCAACCGCTGCTGATCCGGAGG 813650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450776616351120