Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_027016.1
Length=226084
Score E
Sequences producing significant alignments: (Bits) Value
seq302 116 5e-21
>seq302
Length=2538925
Score = 116 bits (128), Expect = 5e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 213995 CAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTT 214054
||||| || || || ||| | ||||| || || || ||| | | | | ||| |
Sbjct 2288459 CAGATGATCGATGGAGAAATGTACCCGCCGACGGTGCGGGACACGCAGGCAGAGATGCTG 2288400
Query 214055 TACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114
||| ||| ||| ||||| | | || ||| | |||| | ||| |||| || ||
Sbjct 2288399 TACCCACCGCACGTGCCCGAGCACCTGCGCTTCTCCGTGGGGCAGGAGGTGTTCGGGCTG 2288340
Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174
||||| || | ||| ||||||||| ||||||||| | ||||||||| | || ||||||
Sbjct 2288339 GTGCCAGGGCTGATGATGTACGCCACGATCTGGCTGCGCGAGCACAACCGCGTCTGCGAC 2288280
Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223
||||| || || ||||||| || ||| ||||||| ||||| |||||||
Sbjct 2288279 GTGCTCAAGCACCAGCACCCCGAGTGGGACGACGAGCAGCTCTTCCAGA 2288231
Score = 102 bits (112), Expect = 1e-16
Identities = 196/289 (68%), Gaps = 0/289 (0%)
Strand=Plus/Minus
Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664
|| ||||| || | |||||||||| | || || || ||||| ||| | || || |||
Sbjct 2286563 AAAGAGATGGCAGCAGAGCTGGAGGAGCTGTATGGAGACATCGATGCCATGGAGCTGTAC 2286504
Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724
| | | || | || || || | |||| |||||| | || || | | | |||
Sbjct 2286503 CCAGGCCTGCTGGTGGAGAAGCCCCGGCCCGGGGCCATCTTTGGCGAGACCATGGTGGAG 2286444
Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784
|||||| || |||||||||| ||| || || |||| |||||||||||| | |||
Sbjct 2286443 ATGGGGGCACCATTCTCCCTGAAGGGGCTGATGGGCAACGCCATCTGCTCCCCCGAGTAC 2286384
Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844
||||| | || ||| | || || | | | ||| ||||||| | | || | ||
Sbjct 2286383 TGGAAGCCCAGCACCTTTGGGGGCAAGGTGGGCTTCGACATCGTCAACACGGCCTCTCTG 2286324
Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCC 214893
||| |||||||| | |||||| ||||| ||||| || |||| ||||
Sbjct 2286323 CAGAAGCTCATCTGCAACAACGTGAAGGGCTGTCCCTTCACCGCCTTCC 2286275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723313548135360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |