Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq302 116 5e-21 >seq302 Length=2538925 Score = 116 bits (128), Expect = 5e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 213995 CAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTT 214054 ||||| || || || ||| | ||||| || || || ||| | | | | ||| | Sbjct 2288459 CAGATGATCGATGGAGAAATGTACCCGCCGACGGTGCGGGACACGCAGGCAGAGATGCTG 2288400 Query 214055 TACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114 ||| ||| ||| ||||| | | || ||| | |||| | ||| |||| || || Sbjct 2288399 TACCCACCGCACGTGCCCGAGCACCTGCGCTTCTCCGTGGGGCAGGAGGTGTTCGGGCTG 2288340 Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174 ||||| || | ||| ||||||||| ||||||||| | ||||||||| | || |||||| Sbjct 2288339 GTGCCAGGGCTGATGATGTACGCCACGATCTGGCTGCGCGAGCACAACCGCGTCTGCGAC 2288280 Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 ||||| || || ||||||| || ||| ||||||| ||||| ||||||| Sbjct 2288279 GTGCTCAAGCACCAGCACCCCGAGTGGGACGACGAGCAGCTCTTCCAGA 2288231 Score = 102 bits (112), Expect = 1e-16 Identities = 196/289 (68%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664 || ||||| || | |||||||||| | || || || ||||| ||| | || || ||| Sbjct 2286563 AAAGAGATGGCAGCAGAGCTGGAGGAGCTGTATGGAGACATCGATGCCATGGAGCTGTAC 2286504 Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724 | | | || | || || || | |||| |||||| | || || | | | ||| Sbjct 2286503 CCAGGCCTGCTGGTGGAGAAGCCCCGGCCCGGGGCCATCTTTGGCGAGACCATGGTGGAG 2286444 Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784 |||||| || |||||||||| ||| || || |||| |||||||||||| | ||| Sbjct 2286443 ATGGGGGCACCATTCTCCCTGAAGGGGCTGATGGGCAACGCCATCTGCTCCCCCGAGTAC 2286384 Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844 ||||| | || ||| | || || | | | ||| ||||||| | | || | || Sbjct 2286383 TGGAAGCCCAGCACCTTTGGGGGCAAGGTGGGCTTCGACATCGTCAACACGGCCTCTCTG 2286324 Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCC 214893 ||| |||||||| | |||||| ||||| ||||| || |||| |||| Sbjct 2286323 CAGAAGCTCATCTGCAACAACGTGAAGGGCTGTCCCTTCACCGCCTTCC 2286275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723313548135360