Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq2693 114 1e-20
seq334 109 4e-19
seq890 95.1 1e-14
>seq2693
Length=3874444
Score = 114 bits (126), Expect = 1e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 41046 TTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTG 41105
|||||||| ||||| || || ||| | || ||||| || ||| ||||||||| ||
Sbjct 2854598 TTGATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTG 2854657
Query 41106 TCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCG 41165
|| || ||| | ||||| || || || |||||||| ||||| || || ||||| || ||
Sbjct 2854658 TCTTGCCAACTCTATCAGAGGTCTGGAGACATGGGTCTAGGAGTGCCTTTTAATATTGCC 2854717
Query 41166 AGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203
|| ||| | ||||||||||| |||||||| || || ||
Sbjct 2854718 AGCTATTCACTGCTCACGTACATGATTGCCCATGTCAC 2854755
>seq334
Length=7684865
Score = 109 bits (120), Expect = 4e-19
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
|||||||| ||| | ||||||| || ||||| ||||| || || |||||||| ||||||
Sbjct 6127756 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 6127697
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||| ||||||||||||||||| || || || ||||| || |||
Sbjct 6127696 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAGGAT 6127649
>seq890
Length=1787418
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194
|| || ||||| | ||||||||||| |||||||| || || ||||| || |||||||||
Sbjct 1673633 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 1673574
Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254
| ||||| | ||| |||||||||| ||||| || || ||||| | || || | |||
Sbjct 1673573 CTGAAGAAGAGGGGTCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 1673514
Query 44255 GA 44256
||
Sbjct 1673513 GA 1673512
Score = 82.4 bits (90), Expect = 6e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987
|||||||| || ||||| ||||| ||||| ||| ||| || ||| |||| || || |||
Sbjct 1677391 CCAGAAGCTCGCTGTTTCTATGGCTTTCAGATTCTCATTGAGAATGTTCACTCAGAGATG 1677332
Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||||| | || ||||| || ||||||||||||
Sbjct 1677331 TACAGCTTGCTCATAGACACCTACATCAAAGAT 1677299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397441400199070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |