Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2693 114 1e-20 seq334 109 4e-19 seq890 95.1 1e-14 >seq2693 Length=3874444 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 41046 TTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTG 41105 |||||||| ||||| || || ||| | || ||||| || ||| ||||||||| || Sbjct 2854598 TTGATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTG 2854657 Query 41106 TCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCG 41165 || || ||| | ||||| || || || |||||||| ||||| || || ||||| || || Sbjct 2854658 TCTTGCCAACTCTATCAGAGGTCTGGAGACATGGGTCTAGGAGTGCCTTTTAATATTGCC 2854717 Query 41166 AGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 || ||| | ||||||||||| |||||||| || || || Sbjct 2854718 AGCTATTCACTGCTCACGTACATGATTGCCCATGTCAC 2854755 >seq334 Length=7684865 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || |||||||| |||||| Sbjct 6127756 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 6127697 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || ||||| || ||| Sbjct 6127696 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAGGAT 6127649 >seq890 Length=1787418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | ||||||||||| |||||||| || || ||||| || ||||||||| Sbjct 1673633 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 1673574 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| | ||| |||||||||| ||||| || || ||||| | || || | ||| Sbjct 1673573 CTGAAGAAGAGGGGTCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 1673514 Query 44255 GA 44256 || Sbjct 1673513 GA 1673512 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| ||||| ||| ||| || ||| |||| || || ||| Sbjct 1677391 CCAGAAGCTCGCTGTTTCTATGGCTTTCAGATTCTCATTGAGAATGTTCACTCAGAGATG 1677332 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| | || ||||| || |||||||||||| Sbjct 1677331 TACAGCTTGCTCATAGACACCTACATCAAAGAT 1677299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397441400199070