Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2246 87.8 2e-12 seq890 86.0 8e-12 >seq2246 Length=973789 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 ||| ||||| ||||| || | || || || || | |||| | ||| || || || Sbjct 490295 CTCCTCCTTGCTGGTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 490354 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| |||||| ||||||| | |||||||||||||||||||| || || Sbjct 490355 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCC 490414 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||| ||||| || | || || || | ||| Sbjct 490415 AGTCTCGGTCTGGGACTCGATGATGGCATACCA 490447 >seq890 Length=1787418 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | |||||||||||| ||||| | || ||||| ||||||| ||||| Sbjct 1673510 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGACCCCTCTTCT 1673569 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||| |||| | ||||| ||| || || || || |||||||| || ||||| ||||| Sbjct 1673570 TCAGCCAAAATATAGCAGCA-AAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAG 1673628 Query 122797 GCAA 122800 |||| Sbjct 1673629 GCAA 1673632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628008338894400