Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq281 125 2e-23
seq1378 105 2e-17
seq334 98.7 3e-15
seq2371 89.7 2e-12
seq2319 89.7 2e-12
seq2926 87.8 5e-12
seq890 84.2 7e-11
>seq281
Length=2586918
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|| || || || || || || || || || || || || ||||| | || ||||||||
Sbjct 2063270 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCC 2063329
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| || || || ||||||||||| || | ||||| || || |||||||| || ||||||
Sbjct 2063330 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCC 2063389
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
|| || || || || ||||| ||||| | ||| || || || ||||| || | |||
Sbjct 2063390 TGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 2063449
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || || || || |||||||||||
Sbjct 2063450 TTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 2063481
Score = 111 bits (122), Expect = 5e-19
Identities = 123/164 (75%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633
|| |||||||| || || || || ||||||||||| || | ||||| |||||||| ||
Sbjct 2064609 GTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATC 2064668
Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693
||||| || ||||| || || || || ||||| ||||| | ||| || || || |||
Sbjct 2064669 CCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCA 2064728
Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || | ||||| || || || || || ||||| ||||||||
Sbjct 2064729 AGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2064772
Score = 96.9 bits (106), Expect = 1e-14
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|| || || || || || || || || || || || || ||||| | || |||||||||
Sbjct 2063498 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCT 2063557
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| || || || |||||||| || || | ||||| |||||||| || ||||| || |||
Sbjct 2063558 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCC 2063617
Query 140646 TGAATTTTAGCTTTTACATTATCAAT 140671
|| || || || || ||||| |||||
Sbjct 2063618 TGGATCTTGGCCTTCACATTCTCAAT 2063643
>seq1378
Length=1476964
Score = 105 bits (116), Expect = 2e-17
Identities = 117/156 (75%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 140583 TCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTA 140642
||||| || || || ||||||||||| || | ||||| |||||||| || ||||| ||
Sbjct 1379605 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1379664
Query 140643 TCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACT 140702
||||| || || ||||| ||||| || || | ||| || ||||| ||||| || |
Sbjct 1379665 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 1379724
Query 140703 GTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738
||||| || || || || || || || |||||||||
Sbjct 1379725 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATT 1379760
>seq334
Length=7684865
Score = 98.7 bits (108), Expect = 3e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778
|| |||||||||| || | |||||| ||||| || | |||||||||||| ||||| |
Sbjct 6125970 ATACCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 6126029
Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838
|||||| |||||| |||| ||||| || ||||| || || ||||| ||| ||||
Sbjct 6126030 TTTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAA 6126089
Query 223839 ACGCTACTA 223847
| |||||||
Sbjct 6126090 AGGCTACTA 6126098
>seq2371
Length=4823497
Score = 89.7 bits (98), Expect = 2e-12
Identities = 124/173 (72%), Gaps = 3/173 (2%)
Strand=Plus/Minus
Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774
|| ||||| || ||||| ||||| || || || ||| || ||| || || || |||
Sbjct 4015095 ACAGCTGCTGCCATTGCTTATGGACTGGACAA---GAGAGAGGGAGAGAAGAACATCCTT 4015039
Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834
| || || | || ||||| ||||||||||| || || || ||| |||| | ||| |
Sbjct 4015038 GTATTCGACCTGGGCGGTGGAACTTTTGATGTGTCCCTCCTCACAATTGACAACGGAGTC 4014979
Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887
|||||||| || ||| ||| || || || || ||||||||||| |||||
Sbjct 4014978 TTTGAAGTGGTGGCTACTAATGGGGACACTCACCTGGGTGGAGAAGACTTTGA 4014926
>seq2319
Length=695921
Score = 89.7 bits (98), Expect = 2e-12
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667
|||| || | ||||| ||||||||||| || || ||||||| || || |||||||
Sbjct 512776 ATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCCACGAAAGATG 512717
Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727
|||| | ||||| ||| | || || || |||| || || || ||||| || || || |
Sbjct 512716 CTGGAACTATTGCAGGGCTGAACGTCCTGCGAATCATCAACGAGCCCACAGCAGCTGCCA 512657
Query 349728 TTGCATATGGGCTTGATAA 349746
|||| |||||||| || ||
Sbjct 512656 TTGCCTATGGGCTGGACAA 512638
>seq2926
Length=3227616
Score = 87.8 bits (96), Expect = 5e-12
Identities = 132/189 (70%), Gaps = 8/189 (4%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||| | | ||| || | || ||||| || || |||| || ||| || || | ||
Sbjct 142772 ACCACCATGAAGTCTCAGCCCCAGGTGAAGGGTGGATTCTTGTTTAATGTTGTAGTTGGA 142713
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
||||| | ||||| || || || || ||||||||||| || || ||||||| ||||
Sbjct 142712 CAATGTGCATCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCCGCTGCTGATTCCGAGG 142653
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
|| || || | |||||| | | |||||| || | |||||||| |||||| |
Sbjct 142652 GATGCCCTCCTCATCCTGGA--------TCTACATTTTCTGTAGAATCAGAAGGTTCAGC 142601
Query 140690 TTCAAGTGT 140698
|| || ||
Sbjct 142600 CTCGAGGGT 142592
>seq890
Length=1787418
Score = 84.2 bits (92), Expect = 7e-11
Identities = 95/125 (76%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 223722 CCTCATCTCTTGATATTAA-TTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCTTT 223780
|||||||||| | || ||| |||||| || || || ||||||||||| | ||| |||||
Sbjct 1673510 CCTCATCTCT-GCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGACCCCTCTTC 1673568
Query 223781 TTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAAAC 223840
|||| ||||||||| || ||| | || ||||| || || ||||| || ||||||
Sbjct 1673569 TTCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAG 1673628
Query 223841 GCTAC 223845
|| ||
Sbjct 1673629 GCAAC 1673633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515195885610242
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |