Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq281 125 2e-23 seq1378 105 2e-17 seq334 98.7 3e-15 seq2371 89.7 2e-12 seq2319 89.7 2e-12 seq2926 87.8 5e-12 seq890 84.2 7e-11 >seq281 Length=2586918 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || || || || || || || || ||||| | || |||||||| Sbjct 2063270 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCC 2063329 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| || || |||||||| || |||||| Sbjct 2063330 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCC 2063389 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || || || ||||| || | ||| Sbjct 2063390 TGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 2063449 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || ||||||||||| Sbjct 2063450 TTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 2063481 Score = 111 bits (122), Expect = 5e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 || |||||||| || || || || ||||||||||| || | ||||| |||||||| || Sbjct 2064609 GTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATC 2064668 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 ||||| || ||||| || || || || ||||| ||||| | ||| || || || ||| Sbjct 2064669 CCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCA 2064728 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | ||||| || || || || || ||||| |||||||| Sbjct 2064729 AGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2064772 Score = 96.9 bits (106), Expect = 1e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || || || || || || || || ||||| | || ||||||||| Sbjct 2063498 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCT 2063557 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || |||||||| || || | ||||| |||||||| || ||||| || ||| Sbjct 2063558 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCC 2063617 Query 140646 TGAATTTTAGCTTTTACATTATCAAT 140671 || || || || || ||||| ||||| Sbjct 2063618 TGGATCTTGGCCTTCACATTCTCAAT 2063643 >seq1378 Length=1476964 Score = 105 bits (116), Expect = 2e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 140583 TCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTA 140642 ||||| || || || ||||||||||| || | ||||| |||||||| || ||||| || Sbjct 1379605 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1379664 Query 140643 TCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACT 140702 ||||| || || ||||| ||||| || || | ||| || ||||| ||||| || | Sbjct 1379665 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 1379724 Query 140703 GTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||| || || || || || || || ||||||||| Sbjct 1379725 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATT 1379760 >seq334 Length=7684865 Score = 98.7 bits (108), Expect = 3e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| || | |||||| ||||| || | |||||||||||| ||||| | Sbjct 6125970 ATACCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 6126029 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 |||||| |||||| |||| ||||| || ||||| || || ||||| ||| |||| Sbjct 6126030 TTTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAA 6126089 Query 223839 ACGCTACTA 223847 | ||||||| Sbjct 6126090 AGGCTACTA 6126098 >seq2371 Length=4823497 Score = 89.7 bits (98), Expect = 2e-12 Identities = 124/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| ||||| || || || ||| || ||| || || || ||| Sbjct 4015095 ACAGCTGCTGCCATTGCTTATGGACTGGACAA---GAGAGAGGGAGAGAAGAACATCCTT 4015039 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | || || | || ||||| ||||||||||| || || || ||| |||| | ||| | Sbjct 4015038 GTATTCGACCTGGGCGGTGGAACTTTTGATGTGTCCCTCCTCACAATTGACAACGGAGTC 4014979 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 |||||||| || ||| ||| || || || || ||||||||||| ||||| Sbjct 4014978 TTTGAAGTGGTGGCTACTAATGGGGACACTCACCTGGGTGGAGAAGACTTTGA 4014926 >seq2319 Length=695921 Score = 89.7 bits (98), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| || | ||||| ||||||||||| || || ||||||| || || ||||||| Sbjct 512776 ATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCCACGAAAGATG 512717 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | ||||| ||| | || || || |||| || || || ||||| || || || | Sbjct 512716 CTGGAACTATTGCAGGGCTGAACGTCCTGCGAATCATCAACGAGCCCACAGCAGCTGCCA 512657 Query 349728 TTGCATATGGGCTTGATAA 349746 |||| |||||||| || || Sbjct 512656 TTGCCTATGGGCTGGACAA 512638 >seq2926 Length=3227616 Score = 87.8 bits (96), Expect = 5e-12 Identities = 132/189 (70%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||| | | ||| || | || ||||| || || |||| || ||| || || | || Sbjct 142772 ACCACCATGAAGTCTCAGCCCCAGGTGAAGGGTGGATTCTTGTTTAATGTTGTAGTTGGA 142713 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 ||||| | ||||| || || || || ||||||||||| || || ||||||| |||| Sbjct 142712 CAATGTGCATCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCCGCTGCTGATTCCGAGG 142653 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || | |||||| | | |||||| || | |||||||| |||||| | Sbjct 142652 GATGCCCTCCTCATCCTGGA--------TCTACATTTTCTGTAGAATCAGAAGGTTCAGC 142601 Query 140690 TTCAAGTGT 140698 || || || Sbjct 142600 CTCGAGGGT 142592 >seq890 Length=1787418 Score = 84.2 bits (92), Expect = 7e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 223722 CCTCATCTCTTGATATTAA-TTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCTTT 223780 |||||||||| | || ||| |||||| || || || ||||||||||| | ||| ||||| Sbjct 1673510 CCTCATCTCT-GCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGACCCCTCTTC 1673568 Query 223781 TTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAAAC 223840 |||| ||||||||| || ||| | || ||||| || || ||||| || |||||| Sbjct 1673569 TTCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAG 1673628 Query 223841 GCTAC 223845 || || Sbjct 1673629 GCAAC 1673633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515195885610242