Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2246 96.9 4e-15 >seq2246 Length=973789 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 20089 GCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGG 20148 ||| |||||||| |||| |||||||| |||||||||||||||| ||||| | | | Sbjct 487187 GCGGCACCGGCCCATCGGCATCGGCGTGCAGGGCCTGGCCGACGCCTTCATCCTCATGAG 487128 Query 20149 CCTCTCATTCGACGATC-CCAAGGCGC-GCGAGCTCAACAAGGGCATCTTCGAGGCCGTG 20206 || | || || || | || |||||| ||| |||||| || |||||||||| || | Sbjct 487127 GTTCCCCTTTGA-GAGCGCCGAGGCGCAGCG-CCTCAACCAGCACATCTTCGAGACCATC 487070 Query 20207 TACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACG 20266 ||| ||| |||||| || ||||| || ||| ||| | ||||| ||||| || Sbjct 487069 TACTACGGGGCCCTGGAGGCCAGCTGCGAGCTGGCCCGGGAGCAGGGCCCCTACGACACC 487010 Query 20267 TTCAAGGGGTCGCCCG 20282 | | |||| ||||||| Sbjct 487009 TACCAGGGCTCGCCCG 486994 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 ||||||||||||| ||||||||||| | || |||| ||| || || |||||||||||| Sbjct 492702 CCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGTAGATGCCC 492761 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 ||||| |||||||||||| | |||||||||||| Sbjct 492762 TCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCAGCT 492799 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||| ||||| || |||||||| |||||||| |||||||||||||| || || ||| Sbjct 492799 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTGAAG 492740 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 |||| || | ||||||||||| ||||||| ||||| Sbjct 492739 CAGTGTGCCCTCATCTCCAAGTCTGCCGGGGGCATCGG 492702 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 79104 GATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTC 79163 ||| || ||||||| || ||||||||||||| | ||||| ||||||||||||| Sbjct 490319 GATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCT 490378 Query 79164 GTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||| |||| |||||||||| |||||| || || || ||||| Sbjct 490379 GTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTC 490420 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/203 (71%), Gaps = 10/203 (5%) Strand=Plus/Plus Query 78724 GGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT---GACTCG 78780 ||||| |||| | | || ||||| | |||| |||| ||| || ||||| | ||| Sbjct 486996 GGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCGGGCCAGCTCGCAGCTGGCCTC- 487054 Query 78781 AGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGC-GCGCCTTGGT 78839 ||||||| ||| ||| | | |||||||||| || |||||| ||| |||||| || Sbjct 487055 --CAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGG-CGCTGCGCCTCGGC 487111 Query 78840 -CTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAG 78898 ||| || || | | | | | |||||| | |||||||||||||| |||||||| Sbjct 487112 GCTC-TCAAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGC 487170 Query 78899 CGATCGGTCGGTGGCGCATGTTG 78921 |||| || ||||| ||| |||| Sbjct 487171 CGATGGGCCGGTGCCGCCGGTTG 487193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548504134328160