Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq2246 96.9 4e-15
>seq2246
Length=973789
Score = 96.9 bits (106), Expect = 4e-15
Identities = 142/196 (72%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 20089 GCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGG 20148
||| |||||||| |||| |||||||| |||||||||||||||| ||||| | | |
Sbjct 487187 GCGGCACCGGCCCATCGGCATCGGCGTGCAGGGCCTGGCCGACGCCTTCATCCTCATGAG 487128
Query 20149 CCTCTCATTCGACGATC-CCAAGGCGC-GCGAGCTCAACAAGGGCATCTTCGAGGCCGTG 20206
|| | || || || | || |||||| ||| |||||| || |||||||||| || |
Sbjct 487127 GTTCCCCTTTGA-GAGCGCCGAGGCGCAGCG-CCTCAACCAGCACATCTTCGAGACCATC 487070
Query 20207 TACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACG 20266
||| ||| |||||| || ||||| || ||| ||| | ||||| ||||| ||
Sbjct 487069 TACTACGGGGCCCTGGAGGCCAGCTGCGAGCTGGCCCGGGAGCAGGGCCCCTACGACACC 487010
Query 20267 TTCAAGGGGTCGCCCG 20282
| | |||| |||||||
Sbjct 487009 TACCAGGGCTCGCCCG 486994
Score = 96.9 bits (106), Expect = 4e-15
Identities = 80/98 (82%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713
||||||||||||| ||||||||||| | || |||| ||| || || ||||||||||||
Sbjct 492702 CCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGTAGATGCCC 492761
Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751
||||| |||||||||||| | ||||||||||||
Sbjct 492762 TCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCAGCT 492799
Score = 91.5 bits (100), Expect = 2e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312
||||| ||||| || |||||||| |||||||| |||||||||||||| || || |||
Sbjct 492799 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTGAAG 492740
Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350
|||| || | ||||||||||| ||||||| |||||
Sbjct 492739 CAGTGTGCCCTCATCTCCAAGTCTGCCGGGGGCATCGG 492702
Score = 86.0 bits (94), Expect = 7e-12
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 79104 GATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTC 79163
||| || ||||||| || ||||||||||||| | ||||| |||||||||||||
Sbjct 490319 GATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCT 490378
Query 79164 GTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205
||| |||| |||||||||| |||||| || || || |||||
Sbjct 490379 GTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTC 490420
Score = 82.4 bits (90), Expect = 8e-11
Identities = 144/203 (71%), Gaps = 10/203 (5%)
Strand=Plus/Plus
Query 78724 GGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT---GACTCG 78780
||||| |||| | | || ||||| | |||| |||| ||| || ||||| | |||
Sbjct 486996 GGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCGGGCCAGCTCGCAGCTGGCCTC- 487054
Query 78781 AGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGC-GCGCCTTGGT 78839
||||||| ||| ||| | | |||||||||| || |||||| ||| |||||| ||
Sbjct 487055 --CAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGG-CGCTGCGCCTCGGC 487111
Query 78840 -CTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAG 78898
||| || || | | | | | |||||| | |||||||||||||| ||||||||
Sbjct 487112 GCTC-TCAAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGC 487170
Query 78899 CGATCGGTCGGTGGCGCATGTTG 78921
|||| || ||||| ||| ||||
Sbjct 487171 CGATGGGCCGGTGCCGCCGGTTG 487193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548504134328160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |