Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1389 93.3 5e-14
seq2246 87.8 2e-12
seq2221 86.0 7e-12
seq890 86.0 7e-12
>seq1389
Length=1464956
Score = 93.3 bits (102), Expect = 5e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | |||||| | || || || || ||||| || ||||||||
Sbjct 1046121 GTGAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCTCCATGCAGCCTTGTGCCAAACTGA 1046062
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144
|| |||| ||| | ||||||||||||| ||||||||| ||||||||||| ||
Sbjct 1046061 CCGATAGGCTGGAGCAAGTTGAGGTTGTTGCTGCCCACGAAGTTCTGAGCCAAGTT 1046006
>seq2246
Length=973789
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389
|||||||||||| || |||||||| ||| ||||| ||||||||||| || || |||
Sbjct 492799 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTGAAG 492740
Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427
||||||||| ||||||||||| | || || |||||
Sbjct 492739 CAGTGTGCCCTCATCTCCAAGTCTGCCGGGGGCATCGG 492702
>seq2221
Length=9094402
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| || |||| ||| ||||||||||| |||||| ||| | || || || ||
Sbjct 81250 GTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTGCCAAACTGA 81191
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | || | || || |||| ||||| || |||||||| ||||||||||||||
Sbjct 81190 CCAATAGGTTGTAACAGATTCACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACT 81131
Query 117425 ATCGT 117429
|| ||
Sbjct 81130 ATAGT 81126
>seq890
Length=1787418
Score = 86.0 bits (94), Expect = 7e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| || || | | |||||||| || || | |||||||
Sbjct 1673512 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGACCCCTCTTCTTC 1673571
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| |||||| || ||| |||||||| |||||||||||||| || ||||||||
Sbjct 1673572 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 1673631
Query 74892 AC 74893
||
Sbjct 1673632 AC 1673633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547195383637200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |