Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq281 179 4e-40
seq1378 129 7e-25
seq2246 87.8 2e-12
>seq281
Length=2586918
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| || || |||||||| || || |||||||| ||| | ||
Sbjct 2063481 ATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 2063422
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| |||| | ||||| || || ||||| |||||||||||||| |||||||||
Sbjct 2063421 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAG 2063362
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| ||||| || ||||||| || ||||| | ||||| ||
Sbjct 2063361 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCTGACTACAAC 2063302
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||||||||| || || || || |||| || | |||||
Sbjct 2063301 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 2063255
Score = 152 bits (168), Expect = 6e-32
Identities = 134/167 (80%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || || |||||||| ||| | ||
Sbjct 2064772 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 2064713
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| |||| ||||||| || || ||||||||||| || || ||||| ||||||
Sbjct 2064712 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCTGACCAG 2064653
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572
||| | || || |||||||| ||||| || ||||||| || |||||
Sbjct 2064652 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCT 2064606
Score = 129 bits (142), Expect = 7e-25
Identities = 130/169 (77%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523
|||| | ||||| ||| ||||||| || || ||||||||||| || || ||||| ||||
Sbjct 2063651 GTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACC 2063592
Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583
||||| | || ||||||||||| ||||| || || |||| || ||||| | ||||| |
Sbjct 2063591 AGCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACA 2063532
Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||| ||||||||||| || || || || |||| || | |||||
Sbjct 2063531 ACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 2063483
>seq1378
Length=1476964
Score = 129 bits (142), Expect = 7e-25
Identities = 122/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| |||||||| || || |||||||| || || |||||||||||| | |
Sbjct 1379760 AATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 1379701
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||| | ||| | || || || || ||||||||||| || || ||||| |||||
Sbjct 1379700 TGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCA 1379641
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560
|||| | || || |||||||| ||||| || || ||
Sbjct 1379640 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 1379605
>seq2246
Length=973789
Score = 87.8 bits (96), Expect = 2e-12
Identities = 142/203 (70%), Gaps = 6/203 (3%)
Strand=Plus/Plus
Query 80590 GTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC---GACTCCATAAGGGCCGCGTGA 80646
|| ||||| ||||||| | | ||||||||| || | ||||| ||||| |||
Sbjct 487011 GTGTCGTAGGGGCCCTGCTCCCGGGCCAGCTCGCAGCTGGCCTCCA---GGGCCCCGTAG 487067
Query 80647 TAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAG 80706
|| ||| ||| |||| | || ||| | | |||||| | | || || | ||
Sbjct 487068 TAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGCGCCTCGGCGCTCTCAAAGGGGAAC 487127
Query 80707 CCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGC 80766
| ||| | ||||| |||| ||||||||||| ||||||||| |||| || ||||| |||
Sbjct 487128 CTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGGCCGGTGCCGC 487187
Query 80767 TTGTTCGATCGCTCGGCCTCCGG 80789
||| || |||||||||| |||
Sbjct 487188 CGGTTGGAGCGCTCGGCCTGCGG 487210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570288913555680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |