Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq2892 284 2e-71
>seq2892
Length=3222183
Score = 284 bits (314), Expect = 2e-71
Identities = 671/1002 (67%), Gaps = 20/1002 (2%)
Strand=Plus/Plus
Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGT 13659
|||| || || ||| ||||||| ||| |||||| |||||| | | | || | |
Sbjct 382763 CGCCCGGCGAGTACCTGAACATTACGAGGGACTGCAGAGCCTTCAAGGAGACCCGGCGCT 382822
Query 13660 ATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGA 13719
| ||| | || || |||| ||| |||| ||||| |||||||||||||| || | |
Sbjct 382823 ACATCGAGTTCCCGCTCAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATTATCA 382882
Query 13720 TCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACC 13779
| |||||||| ||||| ||||| ||||| |||||| | |||||||||| || |||||
Sbjct 382883 TTCACCACAAAATCGACATGTTTGAGCGGCTCCTGCGATCCATCTACGCTCCCCAGAATG 382942
Query 13780 TCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCA 13839
| ||||| ||||| || ||| ||| ||| | || ||| || ||| |||||
Sbjct 382943 TTTACTGTGTCCATGTAGACAGCAAATCCCCGGCCGCCTTCCAGAAGGCCGTGCGGGCCA 383002
Query 13840 TCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCT 13899
| || |||||||| ||||| | ||||| ||| ||| | |||||| || | |
Sbjct 383003 TTGCTGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTATGCCA 383062
Query 13900 CCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCA 13959
||||| || ||||||||||||||| ||||||| |||||| ||||||
Sbjct 383063 CCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTCCTGCAGAGCCCCGTGC 383122
Query 13960 AGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGA 14019
||| | |||||| ||||| ||||| | |||||||| ||||||||||| ||||
Sbjct 383123 CATGGCGCTACCTGATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAGA 383182
Query 14020 TCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGCC 14077
| || |||| |||| ||| ||| ||| | ||| || ||||| | |||| | | |
Sbjct 383183 TAGTCCGGGTGCTGCAGGTGCTGCAGGGCCACAACACCGTGGAGTCGGAGAGGCCCT--C 383240
Query 14078 CAACCACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGT 14137
| ||||| ||| ||| | | |||| ||||| ||| | | |
Sbjct 383241 GGCCGCCAAGCAGCAGCGCTGGGAGTACCACCACGAGGTGG---GCGAGACCAT--CTCT 383295
Query 14138 CAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGC 14197
| ||| | | ||| || || ||||| | ||| |||||| || |||| | |||
Sbjct 383296 C-GCACTGCCCAGAAGAAACTGCCCCCGCCCCACAGCTACCCCATGTTCACGGGCAGCGC 383354
Query 14198 TTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCC- 14256
||| || ||||| ||||| |||||| | | ||| || || || || || |
Sbjct 383355 GTACAACGCCGTCACACGGGACTTCGTGCAGTATGTCTTCGAGAAC---CCCACAGCACG 383411
Query 14257 --TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGT 14314
| || | | |||| | |||||| |||||||| |||||| || | ||||||||| |
Sbjct 383412 GAAGTTCCTCGAGTGGTCCAAGGACAGCTACAGCCCTGACGAGTACGTCTGGGCCACCCT 383471
Query 14315 GCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGG 14373
| | | ||| |||| |||||||| | || ||| || ||||| | | |||||
Sbjct 383472 GAACCGCATG-CCGGGCGTGCCGGGGGGCACTCCCCTCAGCGACAAGTTCCAGCTCTCGG 383530
Query 14374 ACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAG 14433
||||| ||| | | | ||||||||| | ||| ||||| ||||||| || |
Sbjct 383531 ACATGAACGCCCTTCCCCGCCTGGTCAAGTGGGAGTACCTGGAGGGTGATATCACCAAGG 383590
Query 14434 GGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCG 14493
| || | |||||||| ||| |||| |||| | | |||||||||||| |||| |
Sbjct 383591 GCGCGCCCTACCCGCCCTGCACCGGCCGCCACCAGCGCTCCATCTGCATCTACGGGGTGG 383650
Query 14494 GCGACGTGAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAG 14552
|||||||| ||| || | ||| | | || || || ||||||||||||||| ||||
Sbjct 383651 GCGACGTGCCCTGGATGCTGCAGCAGCAC-CATCTCTTGGCCAACAAGTTCGACCCCGAG 383709
Query 14553 ACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594
|||||| ||| | | |||||||| ||| || |||||
Sbjct 383710 GTGGACGATGCGGCCATCCAGTGTCTGGAGGAGTACCTGCGC 383751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658714382000640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |