Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq2892 284 2e-71 >seq2892 Length=3222183 Score = 284 bits (314), Expect = 2e-71 Identities = 671/1002 (67%), Gaps = 20/1002 (2%) Strand=Plus/Plus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGT 13659 |||| || || ||| ||||||| ||| |||||| |||||| | | | || | | Sbjct 382763 CGCCCGGCGAGTACCTGAACATTACGAGGGACTGCAGAGCCTTCAAGGAGACCCGGCGCT 382822 Query 13660 ATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGA 13719 | ||| | || || |||| ||| |||| ||||| |||||||||||||| || | | Sbjct 382823 ACATCGAGTTCCCGCTCAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATTATCA 382882 Query 13720 TCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACC 13779 | |||||||| ||||| ||||| ||||| |||||| | |||||||||| || ||||| Sbjct 382883 TTCACCACAAAATCGACATGTTTGAGCGGCTCCTGCGATCCATCTACGCTCCCCAGAATG 382942 Query 13780 TCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCA 13839 | ||||| ||||| || ||| ||| ||| | || ||| || ||| ||||| Sbjct 382943 TTTACTGTGTCCATGTAGACAGCAAATCCCCGGCCGCCTTCCAGAAGGCCGTGCGGGCCA 383002 Query 13840 TCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCT 13899 | || |||||||| ||||| | ||||| ||| ||| | |||||| || | | Sbjct 383003 TTGCTGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTATGCCA 383062 Query 13900 CCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCA 13959 ||||| || ||||||||||||||| ||||||| |||||| |||||| Sbjct 383063 CCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTCCTGCAGAGCCCCGTGC 383122 Query 13960 AGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGA 14019 ||| | |||||| ||||| ||||| | |||||||| ||||||||||| |||| Sbjct 383123 CATGGCGCTACCTGATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAGA 383182 Query 14020 TCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGCC 14077 | || |||| |||| ||| ||| ||| | ||| || ||||| | |||| | | | Sbjct 383183 TAGTCCGGGTGCTGCAGGTGCTGCAGGGCCACAACACCGTGGAGTCGGAGAGGCCCT--C 383240 Query 14078 CAACCACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGT 14137 | ||||| ||| ||| | | |||| ||||| ||| | | | Sbjct 383241 GGCCGCCAAGCAGCAGCGCTGGGAGTACCACCACGAGGTGG---GCGAGACCAT--CTCT 383295 Query 14138 CAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGC 14197 | ||| | | ||| || || ||||| | ||| |||||| || |||| | ||| Sbjct 383296 C-GCACTGCCCAGAAGAAACTGCCCCCGCCCCACAGCTACCCCATGTTCACGGGCAGCGC 383354 Query 14198 TTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCC- 14256 ||| || ||||| ||||| |||||| | | ||| || || || || || | Sbjct 383355 GTACAACGCCGTCACACGGGACTTCGTGCAGTATGTCTTCGAGAAC---CCCACAGCACG 383411 Query 14257 --TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGT 14314 | || | | |||| | |||||| |||||||| |||||| || | ||||||||| | Sbjct 383412 GAAGTTCCTCGAGTGGTCCAAGGACAGCTACAGCCCTGACGAGTACGTCTGGGCCACCCT 383471 Query 14315 GCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGG 14373 | | | ||| |||| |||||||| | || ||| || ||||| | | ||||| Sbjct 383472 GAACCGCATG-CCGGGCGTGCCGGGGGGCACTCCCCTCAGCGACAAGTTCCAGCTCTCGG 383530 Query 14374 ACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAG 14433 ||||| ||| | | | ||||||||| | ||| ||||| ||||||| || | Sbjct 383531 ACATGAACGCCCTTCCCCGCCTGGTCAAGTGGGAGTACCTGGAGGGTGATATCACCAAGG 383590 Query 14434 GGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCG 14493 | || | |||||||| ||| |||| |||| | | |||||||||||| |||| | Sbjct 383591 GCGCGCCCTACCCGCCCTGCACCGGCCGCCACCAGCGCTCCATCTGCATCTACGGGGTGG 383650 Query 14494 GCGACGTGAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAG 14552 |||||||| ||| || | ||| | | || || || ||||||||||||||| |||| Sbjct 383651 GCGACGTGCCCTGGATGCTGCAGCAGCAC-CATCTCTTGGCCAACAAGTTCGACCCCGAG 383709 Query 14553 ACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 |||||| ||| | | |||||||| ||| || ||||| Sbjct 383710 GTGGACGATGCGGCCATCCAGTGTCTGGAGGAGTACCTGCGC 383751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658714382000640