Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2693 120 2e-22 seq2715 87.8 1e-12 >seq2693 Length=3874444 Score = 120 bits (132), Expect = 2e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 ||||| ||||| || || |||||||||||||| || || |||||||| || ||||| || Sbjct 2854761 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 2854702 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || |||||||| ||||| || || || | || || | Sbjct 2854701 ACTCCTAGACCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 2854642 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 || || ||||| || | ||| ||||||||||| | |||||| Sbjct 2854641 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCAT 2854601 Score = 118 bits (130), Expect = 9e-22 Identities = 129/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| ||||||||||||||||| || ||||| ||||||| || Sbjct 2851134 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATC 2851075 Query 30283 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 ||||| || ||| |||| ||| || ||| |||| || || | || || || || | Sbjct 2851074 ACCCTCCTCTCTGGTGCT-GAAACCTTGCTTATCCAGGAACTCACGCGACCCATTAGCAT 2851016 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||| ||||| || || || ||||||||||||||| ||||| || || Sbjct 2851015 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 2850967 >seq2715 Length=3790167 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || |||||||||||||| || | || || |||||| | | ||| | ||||| || || Sbjct 3177308 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCTGGA 3177249 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || ||| ||||||||||||| | ||||| || ||| Sbjct 3177248 ATGGAGAACCACGTTTTTTTACCCATTATCACTGCATTCTGTTTTCCT 3177201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406295474949288