Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq2693 122 8e-23
>seq2693
Length=3874444
Score = 122 bits (134), Expect = 8e-23
Identities = 120/155 (77%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 34575 TGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGT 34634
||||||| | || |||||||| |||| ||||| ||||| || ||||| || |||
Sbjct 2854599 TGATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 2854658
Query 34635 CCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTA 34694
| ||||| |||||||| | || ||||||||||| |||| ||||| || || ||||| |
Sbjct 2854659 CTTGCCAACTCTATCAGAGGTCTGGAGACATGGGTCTAGGAGTGCCTTTTAATATTGCCA 2854718
Query 34695 GTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729
| || | ||||||||||||||||| || ||||||
Sbjct 2854719 GCTATTCACTGCTCACGTACATGATTGCCCATGTC 2854753
Score = 122 bits (134), Expect = 8e-23
Identities = 120/155 (77%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675
|||||| || ||||||||||||||||| | || || ||||| || || ||||| ||||
Sbjct 2854753 GACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGCACTCCTAG 2854694
Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735
||||||||||| || | |||||||| ||||| |||| || ||||| || |||||
Sbjct 2854693 ACCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACATAGAA 2854634
Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCA 6770
||||| |||| |||||||| || | |||||||
Sbjct 2854633 CTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCA 2854599
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361
|||| |||||||| | || |||||||| ||||| ||| | ||||| || || || |
Sbjct 2850980 CCAAAGAGCTCTCTGCAAAAGGTGTGAAGATTTGGGATGCTAATGGGTCGCGTGAGTTCC 2851039
Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421
|||| |||| || ||| | | |||||||| || ||||| || || || || ||||
Sbjct 2851040 TGGATAAGCAAGGTTTCAGCACCAGAGAGGAGGGTGATTTGGGACCAGTGTATGGTTTCC 2851099
Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446
||||||| || ||||| || || ||
Sbjct 2851100 AGTGGAGGCATTTTGGAGCAGAATA 2851124
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || || ||||| || ||||||||||| || || || || ||||| || ||||||||
Sbjct 2851124 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 2851065
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
| | ||| || |||| ||||| || || || ||||| | ||| ||||| ||||||
Sbjct 2851064 CTGGTGCTGAAACCTTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAATCTTC 2851005
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043
|| || | |||||||| ||||
Sbjct 2851004 ACACCTTTTGCAGAGAGCTCTTTGG 2850980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448245511714080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |