Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2693 122 8e-23 >seq2693 Length=3874444 Score = 122 bits (134), Expect = 8e-23 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 34575 TGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGT 34634 ||||||| | || |||||||| |||| ||||| ||||| || ||||| || ||| Sbjct 2854599 TGATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 2854658 Query 34635 CCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTA 34694 | ||||| |||||||| | || ||||||||||| |||| ||||| || || ||||| | Sbjct 2854659 CTTGCCAACTCTATCAGAGGTCTGGAGACATGGGTCTAGGAGTGCCTTTTAATATTGCCA 2854718 Query 34695 GTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 | || | ||||||||||||||||| || |||||| Sbjct 2854719 GCTATTCACTGCTCACGTACATGATTGCCCATGTC 2854753 Score = 122 bits (134), Expect = 8e-23 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || ||||||||||||||||| | || || ||||| || || ||||| |||| Sbjct 2854753 GACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGCACTCCTAG 2854694 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| || | |||||||| ||||| |||| || ||||| || ||||| Sbjct 2854693 ACCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACATAGAA 2854634 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCA 6770 ||||| |||| |||||||| || | ||||||| Sbjct 2854633 CTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCA 2854599 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | || |||||||| ||||| ||| | ||||| || || || | Sbjct 2850980 CCAAAGAGCTCTCTGCAAAAGGTGTGAAGATTTGGGATGCTAATGGGTCGCGTGAGTTCC 2851039 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| || ||| | | |||||||| || ||||| || || || || |||| Sbjct 2851040 TGGATAAGCAAGGTTTCAGCACCAGAGAGGAGGGTGATTTGGGACCAGTGTATGGTTTCC 2851099 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| || ||||| || || || Sbjct 2851100 AGTGGAGGCATTTTGGAGCAGAATA 2851124 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || || || || ||||| || |||||||| Sbjct 2851124 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 2851065 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| || |||| ||||| || || || ||||| | ||| ||||| |||||| Sbjct 2851064 CTGGTGCTGAAACCTTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAATCTTC 2851005 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || || | |||||||| |||| Sbjct 2851004 ACACCTTTTGCAGAGAGCTCTTTGG 2850980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448245511714080