Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1066 131 1e-25 seq2693 102 7e-17 >seq1066 Length=1678436 Score = 131 bits (144), Expect = 1e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || |||||||||||||||||||| |||||||| | ||||| || ||||| ||| Sbjct 461699 GTGGTGGAGGAGCTCTTCCGAGATGGGGTTAACTGGGGCAGAATTGTGGCCTTCTTCGAG 461640 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 ||||| ||||| ||||||||||| |||||||| | | || ||||||| |||||| Sbjct 461639 TTTGGCGGTGTGATGTGTGTGGAGAGCGTCAACCGGGAGATGTTTCCCCTCGTGGACAAC 461580 Query 3365 ATTGCCGCGTGGATGACAGA 3384 |||||| | |||||||| || Sbjct 461579 ATTGCCACCTGGATGACTGA 461560 >seq2693 Length=3874444 Score = 102 bits (112), Expect = 7e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | || ||||||||||| || | || |||||||| | ||||||||| Sbjct 2854761 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 2854702 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || |||||||||||| | || ||||| || | ||||||||| | || || ||| | Sbjct 2854701 ACTCCTAGACCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 2854642 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || || ||||||| | |||| Sbjct 2854641 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCAT 2854601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414461574971896