Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq281 149 1e-30
seq1378 141 2e-28
seq2926 98.7 2e-15
seq2411 98.7 2e-15
>seq281
Length=2586918
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || ||||| || || |||||||| || || | ||||| | |||||
Sbjct 2063270 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCC 2063329
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || | || ||||| || |||| ||| ||||| |||
Sbjct 2063330 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCC 2063389
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || ||||| ||||||||| | || ||||| || ||||| |||
Sbjct 2063390 TGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 2063449
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | ||||||
Sbjct 2063450 TTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 2063481
Score = 140 bits (154), Expect = 8e-28
Identities = 133/170 (78%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007
||||| | ||||| |||||||||||||| || ||||| || | || |||||||||||
Sbjct 2064606 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 2064665
Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067
| |||||||||||||||||||| ||||| ||||| ||||||||| | || |||
Sbjct 2064666 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACC 2064725
Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || ||||| ||||| || || || ||||| ||||| | |||||| ||
Sbjct 2064726 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2064775
Score = 127 bits (140), Expect = 5e-24
Identities = 120/153 (78%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || ||||| || || |||||||| || || | ||||| | ||||||
Sbjct 2063498 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCT 2063557
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || || || || | || ||||||||||| | ||||||||||||
Sbjct 2063558 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCC 2063617
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055
|||||||| ||||| || || |||||||||
Sbjct 2063618 TGGATCTTGGCCTTCACATTCTCAATGGTGTCA 2063650
>seq1378
Length=1476964
Score = 141 bits (156), Expect = 2e-28
Identities = 126/158 (80%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019
||||||||||||||||| || ||||| || | || ||||||||||| | |||||||||
Sbjct 1379605 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1379664
Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079
||||||||||| ||| || || |||||||||||| | |||||||| || |||||
Sbjct 1379665 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 1379724
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| || || || ||||| || || | |||||||||
Sbjct 1379725 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATTTT 1379762
Score = 87.8 bits (96), Expect = 4e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||||||||| ||||| ||||| || |||||||| || || | ||||| | || |||
Sbjct 1379106 AGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCGTCT 1379165
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTC 211000
|||||||||||||| || ||||| || | || |||||
Sbjct 1379166 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTC 1379203
>seq2926
Length=3227616
Score = 98.7 bits (108), Expect = 2e-15
Identities = 144/205 (70%), Gaps = 8/205 (4%)
Strand=Plus/Minus
Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954
||||||| || | |||||||| ||||| |||| || ||||| || | | | || |
Sbjct 142764 GAAGTCTCAGCCCCAGGTGAAGGGTGGATTCTTGTTTAATGTTGTAGTTGGACAATGTGC 142705
Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014
|||||| ||||||||||| || || ||||| || || || || | |||| | || |
Sbjct 142704 ATCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCCGCTGCTGATTCCGAGGGATGCCCT 142645
Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG 211074
||| |||||||||| || ||||| | | ||||| |||| ||||||| |
Sbjct 142644 CCTCATCCTGGATCT--------ACATTTTCTGTAGAATCAGAAGGTTCAGCCTCGAGGG 142593
Query 211075 TGATCGTCTTTCCCGTGAGAGTCTT 211099
|||| || || ||| |||| |||||
Sbjct 142592 TGATGGTTTTCCCCATGAGGGTCTT 142568
>seq2411
Length=466381
Score = 98.7 bits (108), Expect = 2e-15
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070
|||||||||||||||||||| ||||||||| |||||||||||| | || ||||||
Sbjct 42734 CCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 42793
Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || || ||||| || ||||| || || | ||||||
Sbjct 42794 AGGGTGATGGTTTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 42837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159107237172110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |