Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq281 114 3e-20
seq1378 100 7e-16
seq2815 93.3 1e-13
seq3014 89.7 1e-12
seq2926 86.0 1e-11
>seq281
Length=2586918
Score = 114 bits (126), Expect = 3e-20
Identities = 117/153 (76%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || ||||| || |||||||| || |||| ||||| || | | || | ||||||
Sbjct 2063497 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATC 2063556
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| |||||||| ||||| || || || | || ||||| || || ||||||||||||||
Sbjct 2063557 TTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTC 2063616
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653
|||||||| ||||||| || ||||||||
Sbjct 2063617 CTGGATCTTGGCCTTCACATTCTCAATGGTGTC 2063649
Score = 107 bits (118), Expect = 5e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614
|||||| || |||||||| ||||| ||||| || | || ||||| || || || |||||
Sbjct 2064614 CCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATCCCTTC 2064673
Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674
|||||| |||||||| ||||||| ||| |||||||| || ||||| || | ||
Sbjct 2064674 CTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGT 2064733
Query 225675 GATCGTCTTGCCCGTCA 225691
||| |||||||| ||||
Sbjct 2064734 GATGGTCTTGCCAGTCA 2064750
>seq1378
Length=1476964
Score = 100 bits (110), Expect = 7e-16
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618
||||| |||||||| ||||| ||||| || | || ||||| || || || |||||||||
Sbjct 1379605 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1379664
Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678
|| |||||||| || ||| ||||||||||| || || || || | |||||
Sbjct 1379665 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 1379724
Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|||||||| |||| || || | ||| | ||||||||
Sbjct 1379725 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATTTT 1379762
>seq2815
Length=3503901
Score = 93.3 bits (102), Expect = 1e-13
Identities = 125/174 (72%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610
|||| | ||||||||| || | || || ||||| || || ||||||||||| | |||||
Sbjct 3157512 CCAAGTGTACAACGTTGTTGTCACAGCCCATGCTTTCGTAATGATTTTCTTCATAGTTAT 3157571
Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670
|| | || | || || ||| ||| ||| | || || |||| ||||| || || ||
Sbjct 3157572 ACCAATCATAACTGGAGGGTTCAAAAACTGACTAGTACCCCTAATAATTGGAGCCCCAGA 3157631
Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724
|| || || ||| | | ||||||||||| || ||| | || || || |||||
Sbjct 3157632 CATAGCATTCCCACGAATAAACAATATAAGCTTCTGACTCCTCCCTCCATCCTT 3157685
>seq3014
Length=16813
Score = 89.7 bits (98), Expect = 1e-12
Identities = 124/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610
|||| | || |||||| | | || || ||||| || || || |||||||| | |||||
Sbjct 5546 CCAAGTATATAACGTTGTCGTCACAGCCCATGCTTTCGTAATAATTTTCTTCATAGTTAT 5605
Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670
|| | || || || || |||||||| ||| | || || ||||| || || || || ||
Sbjct 5606 ACCCATCATAATTGGAGGATTCGGAAACTGACTAGTCCCCTTAATAATCGGAGCCCCAGA 5665
Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724
|| || || ||| | | ||||||||||| || ||| | || || || || ||
Sbjct 5666 CATAGCATTCCCACGAATAAACAATATAAGCTTCTGACTTCTCCCCCCCTCGTT 5719
>seq2926
Length=3227616
Score = 86.0 bits (94), Expect = 1e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553
|||||||||| | ||||| || |||||||||| || | ||||| | || ||| || |
Sbjct 142764 GAAGTCTCAGCCCCAGGTGAAGGGTGGATTCTTGTTTAATGTTGTAGTTGGACAATGTGC 142705
Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613
||||| || |||||||||||||| ||||| || || || || | | || || || |
Sbjct 142704 ATCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCCGCTGCTGATTCCGAGGGATGCCCT 142645
Query 225614 CCTTGTCTTGGATCT 225628
||| || |||||||
Sbjct 142644 CCTCATCCTGGATCT 142630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192485148171716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |