Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq281 114 3e-20 seq1378 100 7e-16 seq2815 93.3 1e-13 seq3014 89.7 1e-12 seq2926 86.0 1e-11 >seq281 Length=2586918 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || |||||||| || |||| ||||| || | | || | |||||| Sbjct 2063497 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATC 2063556 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| || || || | || ||||| || || |||||||||||||| Sbjct 2063557 TTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTC 2063616 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| ||||||| || |||||||| Sbjct 2063617 CTGGATCTTGGCCTTCACATTCTCAATGGTGTC 2063649 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||| || |||||||| ||||| ||||| || | || ||||| || || || ||||| Sbjct 2064614 CCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATCCCTTC 2064673 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||| |||||||| ||||||| ||| |||||||| || ||||| || | || Sbjct 2064674 CTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGT 2064733 Query 225675 GATCGTCTTGCCCGTCA 225691 ||| |||||||| |||| Sbjct 2064734 GATGGTCTTGCCAGTCA 2064750 >seq1378 Length=1476964 Score = 100 bits (110), Expect = 7e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 ||||| |||||||| ||||| ||||| || | || ||||| || || || ||||||||| Sbjct 1379605 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1379664 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 || |||||||| || ||| ||||||||||| || || || || | ||||| Sbjct 1379665 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 1379724 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||| |||| || || | ||| | |||||||| Sbjct 1379725 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATTTT 1379762 >seq2815 Length=3503901 Score = 93.3 bits (102), Expect = 1e-13 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | ||||||||| || | || || ||||| || || ||||||||||| | ||||| Sbjct 3157512 CCAAGTGTACAACGTTGTTGTCACAGCCCATGCTTTCGTAATGATTTTCTTCATAGTTAT 3157571 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || | || | || || ||| ||| ||| | || || |||| ||||| || || || Sbjct 3157572 ACCAATCATAACTGGAGGGTTCAAAAACTGACTAGTACCCCTAATAATTGGAGCCCCAGA 3157631 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || || || ||| | | ||||||||||| || ||| | || || || ||||| Sbjct 3157632 CATAGCATTCCCACGAATAAACAATATAAGCTTCTGACTCCTCCCTCCATCCTT 3157685 >seq3014 Length=16813 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | || |||||| | | || || ||||| || || || |||||||| | ||||| Sbjct 5546 CCAAGTATATAACGTTGTCGTCACAGCCCATGCTTTCGTAATAATTTTCTTCATAGTTAT 5605 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || | || || || || |||||||| ||| | || || ||||| || || || || || Sbjct 5606 ACCCATCATAATTGGAGGATTCGGAAACTGACTAGTCCCCTTAATAATCGGAGCCCCAGA 5665 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || || || ||| | | ||||||||||| || ||| | || || || || || Sbjct 5666 CATAGCATTCCCACGAATAAACAATATAAGCTTCTGACTTCTCCCCCCCTCGTT 5719 >seq2926 Length=3227616 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553 |||||||||| | ||||| || |||||||||| || | ||||| | || ||| || | Sbjct 142764 GAAGTCTCAGCCCCAGGTGAAGGGTGGATTCTTGTTTAATGTTGTAGTTGGACAATGTGC 142705 Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 ||||| || |||||||||||||| ||||| || || || || | | || || || | Sbjct 142704 ATCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCCGCTGCTGATTCCGAGGGATGCCCT 142645 Query 225614 CCTTGTCTTGGATCT 225628 ||| || ||||||| Sbjct 142644 CCTCATCCTGGATCT 142630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192485148171716