Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2693 129 5e-25 seq2715 82.4 6e-11 >seq2693 Length=3874444 Score = 129 bits (142), Expect = 5e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 ||||| ||||| || || |||||||||||||| || || |||||||| || ||||| ||| Sbjct 2854761 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 2854702 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || |||||||| ||||| ||||| || | || || | Sbjct 2854701 ACTCCTAGACCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 2854642 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 || || ||||| || | ||||||||||||||| | ||||| Sbjct 2854641 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCAT 2854601 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075 ||||||||||||||||| || ||||| ||||||| || ||||| || ||| |||| ||| Sbjct 2851112 AAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCTCTGGTGCT-GAA 2851054 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 || ||| |||| || || | || || || || ||||| ||||| || || || | Sbjct 2851053 ACCTTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAATCTTCACACCTTTTGC 2850994 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||||||||||| ||||| || || Sbjct 2850993 AGAGAGCTCTTTGGCATTTGTAGAACC 2850967 >seq2715 Length=3790167 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| || | || | |||||| | | ||| | ||||| || || Sbjct 3177308 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCTGGA 3177249 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| ||||||||||||| | ||||| || ||| Sbjct 3177248 ATGGAGAACCACGTTTTTTTACCCATTATCACTGCATTCTGTTTTCCT 3177201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406148280356404