Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq2693 129 5e-25
seq2715 82.4 6e-11
>seq2693
Length=3874444
Score = 129 bits (142), Expect = 5e-25
Identities = 125/161 (78%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
||||| ||||| || || |||||||||||||| || || |||||||| || ||||| |||
Sbjct 2854761 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 2854702
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || |||||||| || |||||||| ||||| ||||| || | || || |
Sbjct 2854701 ACTCCTAGACCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 2854642
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874
|| || ||||| || | ||||||||||||||| | |||||
Sbjct 2854641 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCAT 2854601
Score = 96.9 bits (106), Expect = 3e-15
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075
||||||||||||||||| || ||||| ||||||| || ||||| || ||| |||| |||
Sbjct 2851112 AAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCTCTGGTGCT-GAA 2851054
Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135
|| ||| |||| || || | || || || || ||||| ||||| || || || |
Sbjct 2851053 ACCTTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAATCTTCACACCTTTTGC 2850994
Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162
||||||||||||| ||||| || ||
Sbjct 2850993 AGAGAGCTCTTTGGCATTTGTAGAACC 2850967
>seq2715
Length=3790167
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| |||||||||||||| || | || | |||||| | | ||| | ||||| || ||
Sbjct 3177308 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCTGGA 3177249
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| || ||| ||||||||||||| | ||||| || |||
Sbjct 3177248 ATGGAGAACCACGTTTTTTTACCCATTATCACTGCATTCTGTTTTCCT 3177201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406148280356404
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |