Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq890 116 3e-21
seq334 116 3e-21
>seq890
Length=1787418
Score = 116 bits (128), Expect = 3e-21
Identities = 99/122 (81%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || || || || ||||| ||||| | ||| ||||| ||
Sbjct 1673512 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGACCCCTCTTCTTC 1673571
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
|||||||||||||| ||||| || || |||||||| |||||||| || || ||||| ||
Sbjct 1673572 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 1673631
Query 4692 AC 4693
||
Sbjct 1673632 AC 1673633
Score = 100 bits (110), Expect = 2e-16
Identities = 101/130 (78%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
|| ||||||| || | |||||| ||||| || || ||||||||||||||||| |||| ||
Sbjct 1678333 AAGTCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 1678392
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
| ||||| |||||||| | ||| || | || || || |||||||| || | || || |
Sbjct 1678393 CGTGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGGTCCTTTG 1678452
Query 5041 TTAAATCAAC 5050
||||||||
Sbjct 1678453 ACAAATCAAC 1678462
>seq334
Length=7684865
Score = 116 bits (128), Expect = 3e-21
Identities = 100/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||| || || ||||| |||||||| || | ||| |||||||| ||||| |||||
Sbjct 6125975 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTTTC 6126034
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
|||||||| || | ||||| || ||||||||||| || ||||| || || ||||| |||
Sbjct 6126035 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGCT 6126094
Query 4692 ACTA 4695
||||
Sbjct 6126095 ACTA 6126098
Score = 89.7 bits (98), Expect = 4e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876
||| || ||||| || || || || |||||||| |||||||||||||| || ||||||||
Sbjct 6127655 AATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTG 6127714
Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
|| || || || || | ||||||||| | ||| |||||
Sbjct 6127715 GAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 6127753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427033913133662
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |