Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq334 113 6e-20
seq890 102 1e-16
>seq334
Length=7684865
Score = 113 bits (124), Expect = 6e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
||||||||||| || | ||| |||||||| ||||| |||||||||| ||| | |||||
Sbjct 6125975 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTTTC 6126034
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
|||||||| || | || ||||| ||||||||||| || ||||| ||||| || || ||
Sbjct 6126035 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGCT 6126094
Query 46774 AC 46775
||
Sbjct 6126095 AC 6126096
Score = 91.5 bits (100), Expect = 2e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383
||||| |||||||| | || ||||||||||| || ||||| || ||||| || ||||||
Sbjct 6124749 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTTGTCTTGCCT 6124808
Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATT 46418
|||| || || |||||||| || ||||| |||||
Sbjct 6124809 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 6124843
>seq890
Length=1787418
Score = 102 bits (112), Expect = 1e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| ||||| | ||| || || || || | |||||||| || || | ||| ||
Sbjct 1673512 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGACCCCTCTTCTTC 1673571
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
|||||||||||||| || || || || |||||||| |||||||| || || || || ||
Sbjct 1673572 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 1673631
Query 46774 ACAAGTCTCTCTCC 46787
|| | |||||| ||
Sbjct 1673632 ACCACTCTCTCACC 1673645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712907540196480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |