Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq281 105 2e-17 seq1378 104 5e-17 >seq281 Length=2586918 Score = 105 bits (116), Expect = 2e-17 Identities = 159/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || || || || || || ||||||||||| || | | || Sbjct 2063260 CCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGT 2063319 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||| || || || || || ||||| |||||||||||||| | | ||||| Sbjct 2063320 GCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATTCC 2063379 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||||| || || || || |||||| | || | | |||| ||| ||| || || Sbjct 2063380 CTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCCACCTC 2063436 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || ||||| || || ||||||||||| | |||||| Sbjct 2063437 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 2063481 >seq1378 Length=1476964 Score = 104 bits (114), Expect = 5e-17 Identities = 116/154 (75%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| |||||||||||||| | | ||| |||||||| || || || || Sbjct 1379617 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTG 1379676 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCC 152078 ||||||| |||| | | |||| ||| ||| || ||||| || || || ||||| Sbjct 1379677 GCTTTGACATTCTCGATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCA 1379733 Query 152079 GTGAGAGTCTTCACGAAGACCTGCATTTTACCCT 152112 || || ||||| ||||||| ||||||||| |||| Sbjct 1379734 GTCAGGGTCTTGACGAAGATCTGCATTTTTCCCT 1379767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153776243046394