Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq281 105 2e-17
seq1378 104 5e-17
>seq281
Length=2586918
Score = 105 bits (116), Expect = 2e-17
Identities = 159/225 (71%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | || || || || || || || || || ||||||||||| || | | ||
Sbjct 2063260 CCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGT 2063319
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||| || || || || || ||||| |||||||||||||| | | |||||
Sbjct 2063320 GCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATTCC 2063379
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059
||||| || || || || |||||| | || | | |||| ||| ||| || ||
Sbjct 2063380 CTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCCACCTC 2063436
Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||| || || || ||||| || || ||||||||||| | ||||||
Sbjct 2063437 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 2063481
>seq1378
Length=1476964
Score = 104 bits (114), Expect = 5e-17
Identities = 116/154 (75%), Gaps = 6/154 (4%)
Strand=Plus/Plus
Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021
|| || || ||||| |||||||||||||| | | ||| |||||||| || || || ||
Sbjct 1379617 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTG 1379676
Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCC 152078
||||||| |||| | | |||| ||| ||| || ||||| || || || |||||
Sbjct 1379677 GCTTTGACATTCTCGATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCA 1379733
Query 152079 GTGAGAGTCTTCACGAAGACCTGCATTTTACCCT 152112
|| || ||||| ||||||| ||||||||| ||||
Sbjct 1379734 GTCAGGGTCTTGACGAAGATCTGCATTTTTCCCT 1379767
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153776243046394
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |