Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq281 134 1e-26 seq1378 95.1 9e-15 >seq281 Length=2586918 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || || || | || ||||||||| || ||| ||||| ||||||||||| || | | Sbjct 2063255 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 2063314 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| | || ||||||||||| || |||||||||| | |||||| |||| || Sbjct 2063315 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 2063374 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| ||||| ||| | || | |||||||| || |||||| Sbjct 2063375 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACC 2063434 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || || ||||| || || |||||||||||||| || ||||| Sbjct 2063435 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 2063481 Score = 111 bits (122), Expect = 1e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | || ||||||||| || ||| ||||| ||||||||||| || Sbjct 2063479 CATCCCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 2063538 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| |||| | || ||||||||||| || ||||| |||| | |||||| || | Sbjct 2063539 AGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGG 2063598 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTC 44277 ||| | ||||||||| ||| ||||| ||||| | | |||||||| Sbjct 2063599 AGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC 2063649 Score = 111 bits (122), Expect = 1e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 44176 GCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACC 44235 |||| | || ||||||||||| || |||||||||| | |||||| || | ||| | || Sbjct 2064611 GCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATCCC 2064670 Query 44236 TTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCAC 44295 |||||| ||| ||||| ||||| || | |||||||| || |||||||| | Sbjct 2064671 TTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCAAG 2064730 Query 44296 CGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || ||||| || || ||||||||||| ||||| |||||| || Sbjct 2064731 GGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 2064776 >seq1378 Length=1476964 Score = 95.1 bits (104), Expect = 9e-15 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || ||||||||||| || |||||||||| | |||||| || | ||| | |||||||| Sbjct 1379605 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1379664 Query 44243 TCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 ||| ||||| |||| | ||| | |||||||| || || ||||| | || || Sbjct 1379665 TCCTGGATCTT-GGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGAT 1379723 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || |||||||| |||||||| ||||| Sbjct 1379724 GGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 1379759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359977176427638