Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq281 134 1e-26
seq1378 95.1 9e-15
>seq281
Length=2586918
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || || || | || ||||||||| || ||| ||||| ||||||||||| || | |
Sbjct 2063255 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 2063314
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| |||| | || ||||||||||| || |||||||||| | |||||| |||| ||
Sbjct 2063315 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 2063374
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290
| || ||||| ||| ||||| ||| | || | |||||||| || ||||||
Sbjct 2063375 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACC 2063434
Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| | || || ||||| || || |||||||||||||| || |||||
Sbjct 2063435 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 2063481
Score = 111 bits (122), Expect = 1e-19
Identities = 127/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || |||||||| | || ||||||||| || ||| ||||| ||||||||||| ||
Sbjct 2063479 CATCCCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 2063538
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| ||| |||| | || ||||||||||| || ||||| |||| | |||||| || |
Sbjct 2063539 AGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGG 2063598
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTC 44277
||| | ||||||||| ||| ||||| ||||| | | ||||||||
Sbjct 2063599 AGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC 2063649
Score = 111 bits (122), Expect = 1e-19
Identities = 124/166 (75%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 44176 GCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACC 44235
|||| | || ||||||||||| || |||||||||| | |||||| || | ||| | ||
Sbjct 2064611 GCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATCCC 2064670
Query 44236 TTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCAC 44295
|||||| ||| ||||| ||||| || | |||||||| || |||||||| |
Sbjct 2064671 TTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCAAG 2064730
Query 44296 CGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
|| || ||||| || || ||||||||||| ||||| |||||| ||
Sbjct 2064731 GGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 2064776
>seq1378
Length=1476964
Score = 95.1 bits (104), Expect = 9e-15
Identities = 116/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242
|| ||||||||||| || |||||||||| | |||||| || | ||| | ||||||||
Sbjct 1379605 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1379664
Query 44243 TCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301
||| ||||| |||| | ||| | |||||||| || || ||||| | || ||
Sbjct 1379665 TCCTGGATCTT-GGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGAT 1379723
Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || || |||||||| |||||||| |||||
Sbjct 1379724 GGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 1379759
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359977176427638
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |