Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq302 206 4e-48 seq2371 100 4e-16 >seq302 Length=2538925 Score = 206 bits (228), Expect = 4e-48 Identities = 224/297 (75%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| |||| || ||||| ||||| |||||| | |||| || ||| | || || Sbjct 2286275 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGAGAGGCCG 2286334 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||||||| |||| ||||| | || || ||||||||||||||||||||| | |||| Sbjct 2286335 TGTTGACGATGTCGAAGCCCACCTTGCCCCCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 2286394 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| |||| || || || |||||||| || ||||||| ||| | ||| Sbjct 2286395 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAATGGTGCCCCCATCTCCACCATGG 2286454 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || |||||||| ||| |||||||| ||||||| | || | ||||||||||| Sbjct 2286455 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 2286514 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| |||||| || || || || || || || ||||| |||||||||| Sbjct 2286515 TGGCATCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCATCTCTTTTTCTCCTG 2286571 Score = 129 bits (142), Expect = 8e-25 Identities = 181/254 (71%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | ||||| || | ||||||||| || |||||||| ||| || || || Sbjct 2288206 TCACCGATCAGAATGAGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGC 2288265 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 | || || || || ||||| || | |||||| || | |||||||| |||||||||||| Sbjct 2288266 TGGTGCTTGAGCACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATC 2288325 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 || ||||| || ||||| || || |||| || || || | | |||| || |||||| Sbjct 2288326 ATCAGCCCTGGCACCAGCCCGAACACCTCCTGCCCCACGGAGAAGCGCAGGTGCTCGGGC 2288385 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | || || || | ||| | |||| ||| |||| || || |||||||| Sbjct 2288386 ACGTGCGGTGGGTACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCT 2288445 Query 9472 CCGTCAATCATCTG 9485 || || |||||||| Sbjct 2288446 CCATCGATCATCTG 2288459 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | |||||||| || || | || || || || | |||| | Sbjct 2290056 TCACCTTTAACACCCATTGGAGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTG 2290115 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||| |||||||| |||||||||||||| ||| |||||| ||||| | Sbjct 2290116 TAGTAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTGTAGTCACTATTGTAAGTT 2290175 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || |||||||||||||| | ||||| |||| Sbjct 2290176 GGTGGGCTGTCAATCAAGTGTGATCTTGCTGA 2290207 >seq2371 Length=4823497 Score = 100 bits (110), Expect = 4e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 |||| || || || ||||| ||||||||| | |||||||||||| || | | || | Sbjct 3203853 CTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGATTTCCAAAAAGCC 3203794 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || ||||| || ||||| || | ||| | ||||| || || || ||| ||||||| Sbjct 3203793 CCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGCTTTCCCCAAAAATGCCGTTGGGTT 3203734 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGG 8552 |||| || || | || || || | ||| | ||||| ||| || | |||||| || || Sbjct 3203733 GGGGTTTCTCGAGCAGCAAGCCTGGGTAAAACTCCAGAGCATCAATGTCTCCATACAGCT 3203674 Query 8553 CCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || || || || |||||| ||||||| Sbjct 3203673 CTTCCAGCTCTGCTGCTTTCTCCTCCTCTCCTG 3203641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716849791666560