Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq281 131 4e-25 seq1378 120 7e-22 seq2411 95.1 3e-14 seq2926 84.2 5e-11 >seq281 Length=2586918 Score = 131 bits (144), Expect = 4e-25 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || ||||||||||| || || || || || || |||||||| ||||||| ||| || | Sbjct 2063478 CAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGG--AGCCCAGTG 2063421 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || || ||||| ||||| ||||| || || ||||| || || ||||||| Sbjct 2063420 ACACCATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAGC 2063361 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| || ||||| | || || | || || ||| Sbjct 2063360 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCTGACTACAACA 2063301 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || ||||| || ||||| || || || | ||||| Sbjct 2063300 TCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAG 2063261 >seq1378 Length=1476964 Score = 120 bits (132), Expect = 7e-22 Identities = 126/163 (77%), Gaps = 7/163 (4%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| || || || || || || || |||||||| ||||| || Sbjct 1379762 AAAATGC---AGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA- 1379707 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||||||||| |||||| ||||| |||||||| ||||| ||||||| Sbjct 1379706 -GCCCAGTGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTC 1379648 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 | |||||||| | || ||||| || || || ||||| ||||| Sbjct 1379647 CTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 1379605 >seq2411 Length=466381 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/103 (82%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || ||||| ||||||||||||||||| || || | Sbjct 42834 CAGATCTTCGTGAAGACCCTGACGGGCAAAACCATCACCCTCGAGGTGGA--GCCCAATG 42777 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||||||||||| ||| ||||| |||||||| ||||| Sbjct 42776 ACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGG 42734 >seq2926 Length=3227616 Score = 84.2 bits (92), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||| |||| || |||| || ||||| ||||||||||||| ||| || || Sbjct 142556 CAAATCTTCATGAAGACCCTCATGGGGAAAACCATCACCCTCGAGGCTGAACCTTCTGAT 142615 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | | || || || |||| ||||| | || || ||||||| | | ||||| Sbjct 142616 TCTACAGAAAATGT--------AGATCCAGGATGAGGAGGGCATCCCTCGGAATCAGCAG 142667 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || |||||| | || | || | || ||| | Sbjct 142668 CGGCTGATCTTTGCTGGGAAGCAGCTGGAGGATGGATGCACATTGTCCAACTACAACATT 142727 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || ||||||| || || || || | ||||||| Sbjct 142728 AAACAAGAATCCACCCTTCACCTGGGGCTGAGACT 142762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203684715662716