Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq281 131 4e-25
seq1378 120 7e-22
seq2411 95.1 3e-14
seq2926 84.2 5e-11
>seq281
Length=2586918
Score = 131 bits (144), Expect = 4e-25
Identities = 162/220 (74%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| ||||||||||| || || || || || || |||||||| ||||||| ||| || |
Sbjct 2063478 CAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGG--AGCCCAGTG 2063421
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| || || ||||| ||||| ||||| || || ||||| || || |||||||
Sbjct 2063420 ACACCATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAGC 2063361
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| || ||||| | || || | || || |||
Sbjct 2063360 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCTGACTACAACA 2063301
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141
|||| || ||||| || ||||| || || || | |||||
Sbjct 2063300 TCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAG 2063261
>seq1378
Length=1476964
Score = 120 bits (132), Expect = 7e-22
Identities = 126/163 (77%), Gaps = 7/163 (4%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || ||||| || || || || || || || |||||||| ||||| ||
Sbjct 1379762 AAAATGC---AGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA- 1379707
Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032
|| ||| ||||||||||||| |||||| ||||| |||||||| ||||| |||||||
Sbjct 1379706 -GCCCAGTGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTC 1379648
Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075
| |||||||| | || ||||| || || || ||||| |||||
Sbjct 1379647 CTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 1379605
>seq2411
Length=466381
Score = 95.1 bits (104), Expect = 3e-14
Identities = 84/103 (82%), Gaps = 4/103 (4%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || |||||||| || || || || ||||| ||||||||||||||||| || || |
Sbjct 42834 CAGATCTTCGTGAAGACCCTGACGGGCAAAACCATCACCCTCGAGGTGGA--GCCCAATG 42777
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024
|||||||||||||||| ||| ||||| |||||||| |||||
Sbjct 42776 ACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGG 42734
>seq2926
Length=3227616
Score = 84.2 bits (92), Expect = 5e-11
Identities = 147/215 (68%), Gaps = 8/215 (4%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||| |||| || |||| || ||||| ||||||||||||| ||| || ||
Sbjct 142556 CAAATCTTCATGAAGACCCTCATGGGGAAAACCATCACCCTCGAGGCTGAACCTTCTGAT 142615
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| | || || || |||| ||||| | || || ||||||| | | |||||
Sbjct 142616 TCTACAGAAAATGT--------AGATCCAGGATGAGGAGGGCATCCCTCGGAATCAGCAG 142667
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || || || ||||| || |||||| | || | || | || ||| |
Sbjct 142668 CGGCTGATCTTTGCTGGGAAGCAGCTGGAGGATGGATGCACATTGTCCAACTACAACATT 142727
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|| ||||||| || || || || | |||||||
Sbjct 142728 AAACAAGAATCCACCCTTCACCTGGGGCTGAGACT 142762
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203684715662716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |