Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq281 138 1e-27 seq2411 82.4 7e-11 seq1378 82.4 7e-11 >seq281 Length=2586918 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | || || | |||||| ||||| ||| |||||||| ||||| ||||| Sbjct 2063251 ACAGCCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 2063310 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 |||||||||||| | || || ||||||||||| || || ||||| | ||| ||||| | Sbjct 2063311 AGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGG 2063370 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||||| | |||||| ||| ||| || ||| | | ||||| || | ||| Sbjct 2063371 GGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTC 2063430 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| | || || || || || ||||| ||||| |||||||||||||| Sbjct 2063431 CACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 2063481 Score = 98.7 bits (108), Expect = 9e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| |||||||| ||||| ||||| |||||||||||| Sbjct 2063492 AGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGC 2063551 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | || | | ||| Sbjct 2063552 CCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCC 2063611 Query 41765 TTGTCCATGATTTTTTGCTTCA 41786 |||||| ||| || ||||| Sbjct 2063612 TTGTCCTGGATCTTGGCCTTCA 2063633 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 ||||||||| | || || ||||||||||| || || ||||| | ||| ||||| | ||| Sbjct 2064606 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 2064665 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | || ||||||||| ||| || ||||| | ||||| || | |||||| Sbjct 2064666 ATCCCT-TCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCAC 2064724 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || || ||||| ||||| || || ||||||||||| Sbjct 2064725 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2064775 >seq2411 Length=466381 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| ||||| ||||| | ||||||||| |||| || |||||||| || ||||| ||| Sbjct 42571 TTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCCGCGAAGATC 42630 Query 41735 AGGCGCTGTTGGTCCGCGGG 41754 |||||||| ||||| | ||| Sbjct 42631 AGGCGCTGCTGGTCGGGGGG 42650 >seq1378 Length=1476964 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || ||||| || ||||||||| ||||| ||||| |||||||| || |||| || Sbjct 1379109 ACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCGTCTTCC 1379168 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 ||||||||||| || || ||||| | ||| ||||| Sbjct 1379169 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTC 1379203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462286582696800