Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq281 138 1e-27
seq2411 82.4 7e-11
seq1378 82.4 7e-11
>seq281
Length=2586918
Score = 138 bits (152), Expect = 1e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | || || | |||||| ||||| ||| |||||||| ||||| |||||
Sbjct 2063251 ACAGCCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 2063310
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|||||||||||| | || || ||||||||||| || || ||||| | ||| ||||| |
Sbjct 2063311 AGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGG 2063370
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811
||||| | |||||| ||| ||| || ||| | | ||||| || | |||
Sbjct 2063371 GGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTC 2063430
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| | || || || || || ||||| ||||| ||||||||||||||
Sbjct 2063431 CACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 2063481
Score = 98.7 bits (108), Expect = 9e-16
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | |||||| ||||| ||| |||||||| ||||| ||||| ||||||||||||
Sbjct 2063492 AGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGC 2063551
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || ||||| | ||| ||||| | || | | |||
Sbjct 2063552 CCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCC 2063611
Query 41765 TTGTCCATGATTTTTTGCTTCA 41786
|||||| ||| || |||||
Sbjct 2063612 TTGTCCTGGATCTTGGCCTTCA 2063633
Score = 89.7 bits (98), Expect = 5e-13
Identities = 124/171 (73%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754
||||||||| | || || ||||||||||| || || ||||| | ||| ||||| | |||
Sbjct 2064606 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 2064665
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
| | || ||||||||| ||| || ||||| | ||||| || | ||||||
Sbjct 2064666 ATCCCT-TCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCAC 2064724
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||| | || || || || || ||||| ||||| || || |||||||||||
Sbjct 2064725 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2064775
>seq2411
Length=466381
Score = 82.4 bits (90), Expect = 7e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734
||||| ||||| ||||| | ||||||||| |||| || |||||||| || ||||| |||
Sbjct 42571 TTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCCGCGAAGATC 42630
Query 41735 AGGCGCTGTTGGTCCGCGGG 41754
|||||||| ||||| | |||
Sbjct 42631 AGGCGCTGCTGGTCGGGGGG 42650
>seq1378
Length=1476964
Score = 82.4 bits (90), Expect = 7e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| || ||||| || ||||||||| ||||| ||||| |||||||| || |||| ||
Sbjct 1379109 ACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCGTCTTCC 1379168
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748
||||||||||| || || ||||| | ||| |||||
Sbjct 1379169 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTC 1379203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462286582696800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |