Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq291424 150 2e-31 seq331414 127 2e-24 seq291425 120 3e-22 >seq291424 Length=270 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 5 AACATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAACCC 64 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||| | || || | ||||| |||||||| ||| | || Sbjct 65 AGTGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGAT 124 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| ||| ||||| |||||||| |||| |||||| || |||||| Sbjct 125 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCTGACTAC 184 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| |||| || ||||| || ||||| |||| || ||| Sbjct 185 AACATCCAGAAGGAGTCCACTCTCCATCTTGTCCTGCGCCTGAGAGGAGGC 235 >seq331414 Length=254 Score = 127 bits (140), Expect = 2e-24 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 |||||||| ||||| || | || ||||| | || |||| ||| ||||| |||||||| Sbjct 37 GACAAAGAAGGCATTCCTCCTGATCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAA 96 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||||||| ||||||||||||||||||||| |||| |||||||| ||| || Sbjct 97 GACGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCATCTGGTGCTG 156 Query 40903 CGCTTGAGGGGCGGC 40917 ||| | ||||| ||| Sbjct 157 CGCCTCAGGGGTGGC 171 >seq291425 Length=203 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| | || ||||| | || |||| || ||||| |||||||| Sbjct 58 GACAAGGAGGGCATTCCCCCCGATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAA 117 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| |||||| || ||||||||||||||||||||| |||| ||||| || ||| || Sbjct 118 GACGGGCGCACTCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 177 Query 40903 CGCTTGAGGGGCGG 40916 ||| ||||||| || Sbjct 178 CGCCTGAGGGGAGG 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508959299600480