Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq609247 129 1e-24 >seq609247 Length=1099 Score = 129 bits (142), Expect = 1e-24 Identities = 110/133 (83%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||||||||||||| | ||||| ||||| |||||||||||||||| ||||| || Sbjct 41 GCTTTTTTTGGAGCTCAGATGAATTCATTTATTCATGTTATTATGTACATGTATTACGGA 100 Query 52117 ATGGCCGCTTGTGGTCCT-ATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| ||| | ||||||||| ||||| ||||||||||| || | ||||| Sbjct 101 TTAGCTGCCTGTGGCCCTAAAGTTCAGAAA-TATCTGTGGTGGAAACGGTACTTGACTAT 159 Query 52176 AATGCAGTTGGTA 52188 | ||||||||||| Sbjct 160 ATTGCAGTTGGTA 172 Score = 113 bits (124), Expect = 8e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || ||||| ||| |||| ||||| || ||||| || || Sbjct 871 GGTGCAGTTCCATGTGACTATTGGCCATACAGCTTTGTCTATTTATATTGATTGTCCTTT 930 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||| |||||||| || ||| || ||| ||||| |||| | ||||| || ||||||| Sbjct 931 TCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTATCACCTTCATTTTCTTGTTTGG 990 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||| | | | ||||| ||| Sbjct 991 TAACTTCTACTATCGGACATATAAG 1015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 911979981959920