Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq673048 84.2 2e-11 >seq673048 Length=333 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 3175 ACTTACATAATTTCAGTCCTCCTGCAGTGTATACCCGGTGGTATCACGTCAACAGCGATA 3234 |||||||| || || |||||| |||||| |||| ||| || |||| |||| |||| Sbjct 144 ACTTACATGATCTCCTTCCTCCGGCAGTGAATACTCGGCGGCGTCACATCAATGGCGAGG 203 Query 3235 ATAGGCCCCAAGCCAGTAGGCCGATTAGTGACTTTCACGCACTTGCACCTCTTG-TCGAC 3293 || |||||| ||| | | | ||| ||||| || ||||||||||||||| | | | Sbjct 204 ATGAGCCCCAGGCCGATGACCTGGGCAGTTACTTTGACACACTTGCACCTCTTGTTGGTC 263 Query 3294 AGCGAGACTCTCCAGTGA 3311 ||| || ||||||||||| Sbjct 264 AGC-AGGCTCTCCAGTGA 280 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 138309 TCACTGGAGAGTCTCGCTGTCGA-CAAGAGGTGCAAGTGCGTGAAAGTCACTAATCGGCC 138367 ||||||||||| || |||| | | ||||||||||||||| || ||||| ||| | | Sbjct 280 TCACTGGAGAGCCT-GCTGACCAACAAGAGGTGCAAGTGTGTCAAAGTAACTGCCCAGGT 222 Query 138368 TACTGGCTTGGGGCCTATTATCGCTGTTGACGTGATACCACCGGGTATACACTGCAGGAG 138427 | ||| |||||| || |||| |||| |||| || ||| |||| |||||| |||| Sbjct 221 CATCGGCCTGGGGCTCATCCTCGCCATTGATGTGACGCCGCCGAGTATTCACTGCCGGAG 162 Query 138428 GACTGAAATTATGTAAGT 138445 || || || |||||||| Sbjct 161 GAAGGAGATCATGTAAGT 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562154628306720