Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq456222 114 1e-20 seq456220 102 7e-17 seq624763 98.7 9e-16 seq624764 82.4 7e-11 >seq456222 Length=339 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 16245 CACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTA 16304 |||||| || | | || || || || || | || || ||||| || | || ||||||| Sbjct 41 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTA 100 Query 16305 GTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAA 16364 | || | || || | |||||||||||| ||||||||||| |||||||| || ||||||| Sbjct 101 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 160 Query 16365 CTGCGGCAAATGCAACCAATCGCTCACC 16392 |||| ||||| ||||||| | |||||| Sbjct 161 CTGCAGCAAAGGCAACCACCCTCTCACC 188 >seq456220 Length=899 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| ||| |||| || ||||| || || | | || |||||| | | || Sbjct 159 AAAAATCTGCATCCAGAGTGAAAACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 218 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 |||| || ||| | ||| ||||||||||||||||||||||| | |||||||| |||| Sbjct 219 GATACTCCGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTCCA 278 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | |||||||||||||||| || Sbjct 279 TGAAATCAAAAGGATTTTCTG 299 >seq624763 Length=1955 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | ||| || ||||| || || || ||||||| |||| ||| || Sbjct 994 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 935 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct 934 AGCCAAAAAATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 875 Query 16379 AC 16380 || Sbjct 874 AC 873 >seq624764 Length=1209 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 |||||||| ||| ||| | |||||||||| |||| ||| |||||||| || || || Sbjct 289 TTTGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTG 230 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||| | || || || ||||| |||||||||||||| Sbjct 229 CCTTCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 456892490762800