Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq193592 105 5e-18 seq940523 95.1 8e-15 >seq193592 Length=307 Score = 105 bits (116), Expect = 5e-18 Identities = 189/275 (69%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 107544 CGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAG 107603 || |||||| |||| || ||| | ||||| | ||||||||| |||||||| ||| Sbjct 301 CGCGGGGACGAGGAGGCGGTGCGGGACGCCCTGGTGAGCAACCTGGAGGTGAAGAACAAG 242 Query 107604 CGGTCGCCTCTCACTGGCACCTAT---TACCTCAACATAACCAGAGACTGTGAGCGCTTC 107660 || ||| || | || || | ||||| ||||| || | ||||| ||||| Sbjct 241 AGGGAGCCCCTGA---GCCCCGAGGAGTACCTGAACATGACGAAGGACTGCCGCAGCTTC 185 Query 107661 AAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATT 107720 |||| || | ||| ||||||| ||||| | || || |||||||||||| Sbjct 184 AAGGAGGGCCGGCGCTACATCGAGTTCCCGCTGAGCGAGGAGGAAGCCGACTTCCCCATT 125 Query 107721 GCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTG 107780 |||||||| ||||| |||| | ||||| || | || || ||||| ||||| | | Sbjct 124 GCCTACTCCATGGTCATCCACCACAAGATCGAGATGTTCGAGCGGCTCCTGCGCTCTCTC 65 Query 107781 TATGCCCCTCAGAACATATACTGTGTCCACGTGGA 107815 || || || |||||| | ||||| || |||||||| Sbjct 64 TACGCGCCGCAGAACGTCTACTGCGTGCACGTGGA 30 >seq940523 Length=1489 Score = 95.1 bits (104), Expect = 8e-15 Identities = 193/284 (68%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || || || || || |||| ||||| || ||||| | Sbjct 171 TTGAGTGGGCAAAAGACACTTACAGTCCTGATGAGTACCTATGGGCAACGATTCAGAGAA 230 Query 108334 -CTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACT 108392 | ||| | | || ||| ||||| || | |||||| || | || || |||| | Sbjct 231 TCCCCGACG-TCCCAGGCGCTGTTTCTTCTAATGAGAAGTATGACGTTTCTGATATGAAT 289 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 || | || ||| | ||||||||||||||| ||| |||||||| | || || || Sbjct 290 GCACTGGCTAGGTTTGTCAAGTGGCAGTACTTCGAAGGAGATGTGTCTAAAGGTGCACCC 349 Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512 || |||| ||| |||| | ||| | | |||| | | |||| || |||||| Sbjct 350 TACCCACCATGCAGTGGAGTTCATGTTCGCTCTGTCTGTGTGTTTGGGGTAGGAGACCTG 409 Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 ||||||| || | ||||| ||| |||| || || |||||||| Sbjct 410 AACTGGATGCTGCGAAACCACCACTTCTTTGCTAATAAGTTTGA 453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 344143129217052