Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq456222 114 1e-20 seq624763 105 6e-18 >seq456222 Length=339 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || ||||| || ||||| ||||| | || | || | Sbjct 53 CCTCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTAGGCCCCTCTTCT 112 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||||||||| ||||| ||||| || |||||||| || || |||||||||||||| | Sbjct 113 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 172 Query 13802 C 13802 | Sbjct 173 C 173 >seq624763 Length=1955 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||||| || || || || ||||| || | ||| ||||| || |||| ||| | Sbjct 996 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 937 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | |||||| || | || || || || |||||||| ||||| || ||||| ||||| | Sbjct 936 TCAGCCAAAAAATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 877 Query 13802 CTATTAGTCGTTCTCC 13817 ||| || |||||||| Sbjct 876 CTACTACACGTTCTCC 861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472773958044720