Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq456222 114 1e-20 seq624763 105 6e-18 >seq456222 Length=339 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 13161 CACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAA 13220 |||| | || | | |||||||| || || || || || ||||| || | || ||||| | Sbjct 41 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTA 100 Query 13221 GCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAA 13280 | || | || || | |||||||||||||||||| ||||||||||| || || ||||||| Sbjct 101 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 160 Query 13281 CTGCTGCAAACGCTATCAACCTTTCACC 13308 |||| ||||| || | || ||| ||||| Sbjct 161 CTGCAGCAAAGGCAACCACCCTCTCACC 188 >seq624763 Length=1955 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || ||||| || ||||| || || || ||||| | |||| ||| || Sbjct 994 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 935 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||| || | ||||| ||||| ||||| || |||||||| ||||||||||| ||| Sbjct 934 AGCCAAAAAATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 875 Query 13295 A 13295 | Sbjct 874 A 874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425876885249196