Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lyrurus_20tetrix_20tetrix_20[genbank_20GCA_5F000586395.1_202014-03- 08] 971,998 sequences; 657,025,294 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq609244 181 2e-40 seq331414 118 2e-21 seq456222 116 8e-21 seq624763 102 2e-16 seq956541 95.1 3e-14 seq609247 91.5 3e-13 seq624761 84.2 5e-11 >seq609244 Length=1808 Score = 181 bits (200), Expect = 2e-40 Identities = 138/163 (85%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| |||| |||||||| |||||||||||||| | ||||||||| Sbjct 1078 GCTTTATGGTGGTATTATGTCTCGAAAGGAATTGAATACCTAGATACAGTGTTCTTCATC 1137 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | |||||||| || |||||||||||||| ||||| ||||| ||||| || ||||| Sbjct 1138 CTGAGGAAGAAATTCAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 1197 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 |||||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 1198 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 1240 >seq331414 Length=254 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || |||||||| || || | |||||| Sbjct 155 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 96 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || |||||||| ||||||||||| || |||||||| ||| Sbjct 95 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCC 36 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 || ||||| || || ||||| || | ||| || || Sbjct 35 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACT 1 >seq456222 Length=339 Score = 116 bits (128), Expect = 8e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || || ||| | ||||| ||||| || || ||||| || ||||||||||| || ||||| Sbjct 188 GGTGAGAGGGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCT 129 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| |||||| ||||||| || ||||| ||||| ||||| ||||| || || ||| | Sbjct 128 GCTATATTTTGGCTGAAGAAGAGGGGCCTAATGCCTGGATTGACTTTTTCCAATGAACTT 69 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 68 ATTAGCAGAGATGA 55 >seq624763 Length=1955 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| || ||||| || || ||||| || |||||||| || |||||||| Sbjct 861 GGAGAACGTGTAGTAGCATTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 920 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| |||||||||||||| | ||||| ||| | ||||| ||||| || | Sbjct 921 TCCATTTTTTGGCTGAAGAAAAGAGGCTTAATGCCTGGACTCACTTTTTCTAATGAGCTC 980 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 981 ATCAGTAGAGATGA 994 >seq956541 Length=1389 Score = 95.1 bits (104), Expect = 3e-14 Identities = 183/268 (68%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 174073 CAGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAAC 174132 |||| |||| || | ||| ||||||||||| | ||| |||||| | ||||| |||||| Sbjct 707 CAGTGAATACTCCACACGGATTATACTACAGTCAAGGATTGAAGGGGAAACAGGTGGAAT 648 Query 174133 TTTCAGCTGTTTATTATTCCAAATTTCAATATTACCAG--GAAGTAGTTGCTTTCCACGC 174190 ||||||| ||| |||||| |||| | || |||| || || | | ||||||| Sbjct 647 TTTCAGCGCTTTTCCATTCCAGGTTTCTGTCTTGCCAGATGATAAAGAT--TCTCCACGC 590 Query 174191 GATGAGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGTATT 174250 || || ||| | | | |||| ||| || |||| | | |||||||| |||| || Sbjct 589 AGGTTGGCAACAAGCTGTTTGACTTCCTTCATTTTTCCCTTGGCATAAAATGCCTGTGTT 530 Query 174251 TGGTAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCAACT 174310 ||||| || | || |||| || |||| || || |||||||| || |||| Sbjct 529 TGGTAAATGGCTGCCTTTGGCACCACCACACGGGAAGAGCAGTTTTCAATCTCAGCAAAG 470 Query 174311 ATCCTAACGTATTCACCAGGTACATAAC 174338 ||| || ||||||| | ||| ||| Sbjct 469 ATCTGAATTGATTCACCTGAAACAAAAC 442 >seq609247 Length=1099 Score = 91.5 bits (100), Expect = 3e-13 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 78644 GGACAAGCGTTTCTAGGAGCTGAAATAAATTCATTCGTACACGTTATTATGTATACTTAT 78703 ||||| || ||| | |||||| | || |||||||| | || ||||||||||| | ||| Sbjct 36 GGACA-GCTTTTTTTGGAGCTCAGATGAATTCATTTATTCATGTTATTATGTACATGTAT 94 Query 78704 TACGGTATTGCTGCATGCGGCCCTACATTTCGTAAGTATTTGTGGTGGAAGAGATATCTT 78763 ||||| | ||||| || ||||||| | ||| || ||| |||||||||| | || | Sbjct 95 TACGGATTAGCTGCCTGTGGCCCTAAAGTTCAGAAATATCTGTGGTGGAAACGGTACTTG 154 Query 78764 ACTATAATGCAATTG 78778 |||||| |||| ||| Sbjct 155 ACTATATTGCAGTTG 169 >seq624761 Length=539 Score = 84.2 bits (92), Expect = 5e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| |||| ||||||| || || || | ||||| | ||||| || || | Sbjct 243 TCTAGGTGGAGCGGTTCAGTCAAGAAGTGCAAATCACAGAAGCACGTTGTTTCTATGGCT 302 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 ||||||| || || |||||||| |||||||| ||||||||||| | || || || || | Sbjct 303 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACGTACA 362 Query 269016 T 269016 | Sbjct 363 T 363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1137059201680584